Probing conserved surfaces on PapD
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Quantitative and Qualitative Examination of Particle-particle Interactions Using Colloidal Probe Nanoscopy
Published on: July 18, 2014
D L Hung1, S D Knight, S J Hultgren
1Department of Molecular Microbiology, Washington University School of Medicine, St Louis, MO 63110, USA.
Insights
PapD, a chaperone protein in Escherichia coli, is essential for assembling P pili. Specific mutations affect its stability and subunit binding, yet Thr-53 is crucial for pilus assembly without impacting chaperone-subunit interactions.
Area of Science:
- Microbiology
- Structural Biology
- Molecular Biology
Background:
- PapD is a periplasmic chaperone essential for P pilus assembly in pyelonephritic Escherichia coli strains.
- It belongs to a superfamily of immunoglobulin-like chaperones that, with ushers, assemble adhesive organelles.
- PapD features two immunoglobulin-like domains separated by a subunit-binding cleft.
Purpose of the Study:
- To investigate the roles of conserved residue clusters in PapD structure and function.
- To elucidate the specific contributions of key residues to chaperone stability, subunit binding, and pilus assembly.
Main Methods:
- Site-directed mutagenesis was employed to alter specific residues within the PapD protein.
- The effects of these mutations on in vivo stability, chaperone-subunit complex formation, and pilus assembly were assessed.
Main Results:
- A buried salt bridge within the cleft is critical for PapD's in vivo stability.
- Residues on the G1 beta strand are essential for efficient subunit binding, aligning with crystal structure data.
- Mutations at Thr-53, located on the amino-terminal domain surface, are critical for pilus assembly but do not disrupt chaperone-subunit complex formation.
Conclusions:
- PapD's structure and function are critically dependent on specific conserved residues.
- While stability and subunit binding are influenced by cleft residues, Thr-53 plays a distinct, essential role in the final pilus assembly step.
- Understanding these mechanisms provides insights into the assembly of bacterial adhesive organelles.
Abstract:
PapD is the periplasmic chaperone required for the assembly of P pili in pyelonephritic strains of Escherichia coli. It consists of two immunoglobulin-like domains bisected by a subunit binding cleft. PapD is the prototype member of a super family of immunoglobulin-like chaperones that work in concert with their respective ushers to assemble a plethora of adhesive organelles including pilus- and non-pilus-associated adhesins. Three highly conserved residue clusters have been shown to play critical roles in the structure and function of PapD, as determined by site-directed mutagenesis. The in vivo stability of the chaperone depended on the formation of a buried salt bridge within the cleft. Residues along the G1 beta strand were required for efficient binding of subunits consistent with the crystal structure of PapD-peptide complexes. Finally, Thr-53, a residue that is part of a conserved band of residues located on the amino-terminal domain surface opposite the subunit binding cleft, was also found to be critical for pilus assembly, but mutations at Thr-53 did not interfere with chaperone-subunit complex formation.
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