Defining the substrate specificity of cdk4 kinase-cyclin D1 complex
R H Grafstrom1, W Pan, R H Hoess
1Genetics and Cancer Group, Dupont Pharmaceutical Co., Wilmington, DE 19880-0336, USA. robert.h.grafstrom@dupontpharma.com
Abstract:
cdk4 kinase-cyclin D1 complex (cdk4/D1) does not phosphorylate all of the sites within retinoblastoma protein (Rb) equally. Comparison of five phosphorylation sites within the 15 kDa C domain of Rb indicates that Ser795 is the preferred site of phosphorylation by cdk4/D1. A series of experiments has been performed to determine the properties of this site that direct preferential phosphorylation. For cdk4/D1, the preferred amino acid at the third position C-terminal to the phosphorylated serine/threonine is arginine. Substitution of other amino acids, including a conservative change to lysine, has dramatic effects on the rates of phosphorylation. This information has been used to mutate less favorable sites in Rb, converting them to sites that are now preferentially phosphorylated by cdk4/D1. A conserved site at Ser842 in the related pocket protein p107 is also preferentially phosphorylated by cdk4/D1. Although Rb and p107 differ significantly in sequence, the Rb Ser795 site can replace the p107 Ser842 site without affecting the rate of phosphorylation. These results suggest that although a determinant of specificity resides in the sequences surrounding the phosphorylated site, the structural context of the site is also a critical parameter of specificity.
Insights
The cyclin-dependent kinase 4 (CDK4) / cyclin D1 complex preferentially phosphorylates retinoblastoma protein (Rb) at Ser795. Specific amino acid sequences and structural context dictate this phosphorylation site preference.
Area of Science:
- Molecular Biology
- Cell Cycle Regulation
- Protein Phosphorylation
Background:
- The cyclin-dependent kinase 4 (CDK4) / cyclin D1 complex is a key regulator of cell cycle progression.
- Retinoblastoma protein (Rb) is a critical tumor suppressor that controls cell cycle entry.
- Rb is regulated by phosphorylation, with specific sites influencing its function.
Purpose of the Study:
- To identify the preferred phosphorylation site of the CDK4/cyclin D1 complex on Rb.
- To determine the sequence and structural determinants of this phosphorylation specificity.
- To investigate the functional conservation of phosphorylation sites in related proteins.
Main Methods:
- Site-directed mutagenesis of Rb phosphorylation sites.
- In vitro kinase assays using CDK4/cyclin D1 complex.
- Comparison of phosphorylation rates at different Rb and p107 sites.
Main Results:
- Serine 795 (Ser795) in the Rb C-terminal domain is the preferred phosphorylation site for CDK4/D1.
- Arginine at the third position C-terminal to the target serine is crucial for efficient phosphorylation.
- Mutating less favorable sites in Rb to mimic Ser795 enhances CDK4/D1 phosphorylation.
- The Rb Ser795 site can substitute for the p107 Ser842 site without altering phosphorylation rates.
Conclusions:
- Phosphorylation site specificity by CDK4/D1 is determined by both surrounding amino acid sequences and the structural context of the site.
- Understanding these determinants allows for the engineering of specific phosphorylation sites.
- Conserved phosphorylation mechanisms exist between Rb and related proteins like p107.
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