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Updated: Aug 2, 2026

Application of Stopped-flow Kinetics Methods to Investigate the Mechanism of Action of a DNA Repair Protein
Published on: April 1, 2010
hMSH2-hMSH6 forms a hydrolysis-independent sliding clamp on mismatched DNA
S Gradia1, D Subramanian, T Wilson
1Department of Microbiology and Immunology, Kimmel Cancer Center, Thomas Jefferson University, Philadelphia, Pennsylvania 19107, USA.
Abstract:
Mismatch recognition by the human MutS homologs hMSH2-hMSH6 is regulated by adenosine nucleotide binding, supporting the hypothesis that it functions as a molecular switch. Here we show that ATP-induced release of hMSH2-hMSH6 from mismatched DNA is prevented if the ends are blocked or if the DNA is circular. We demonstrate that mismmatched DNA provokes ADP-->ATP exchange, resulting in a discernible conformational transition that converts hMSH2-hMSH6 into a sliding clamp capable of hydrolysis-independent diffusion along the DNA backbone. Our results support a model for bidirectional mismatch repair in which stochastic loading of multiple ATP-bound hMSH2-hMSH6 sliding clamps onto mismatch-containing DNA leads to activation of the repair machinery and/or other signaling effectors similar to G protein switches.
Insights
Human DNA mismatch repair protein hMSH2-hMSH6 acts as a molecular switch. ATP binding allows it to slide along DNA, aiding in efficient and bidirectional DNA repair processes.
Area of Science:
- Molecular biology
- DNA repair mechanisms
- Cellular signaling
Background:
- The human MutS homologs, specifically hMSH2-hMSH6, are crucial for DNA mismatch recognition.
- Adenosine nucleotide binding is known to regulate this process, suggesting a molecular switch function.
Purpose of the Study:
- To investigate the mechanism of hMSH2-hMSH6 interaction with mismatched DNA.
- To elucidate the role of ATP binding and exchange in DNA mismatch repair.
- To understand how hMSH2-hMSH6 functions as a sliding clamp.
Main Methods:
- Experiments involving blocked and circular DNA substrates.
- Analysis of ATP-ADP exchange dynamics.
- Conformational change studies of hMSH2-hMSH6.
Main Results:
- ATP-induced release of hMSH2-hMSH6 from mismatched DNA is hindered by DNA end-blocking or circularization.
- Mismatched DNA triggers ADP to ATP exchange within hMSH2-hMSH6.
- This exchange induces a conformational shift, transforming hMSH2-hMSH6 into a sliding clamp for hydrolysis-independent diffusion.
Conclusions:
- hMSH2-hMSH6 functions as a bidirectional DNA mismatch repair switch.
- The protein acts as a sliding clamp, facilitating diffusion along the DNA backbone.
- This mechanism, involving stochastic loading of multiple clamps, activates repair machinery and signaling effectors, akin to G protein switches.
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