Related Experiment Video
Updated: Aug 8, 2026

Detection of Protein Ubiquitination
Published on: August 19, 2009
Down-regulation of p27(Kip1) by two mechanisms, ubiquitin-mediated degradation and proteolytic processing
M Shirane1, Y Harumiya, N Ishida
1Department of Molecular and Cellular Biology, Medical Institute of Bioregulation, Kyushu University, Fukuoka 812-8582, Japan.
Abstract:
The intracellular level of p27(Kip1), a cyclin-dependent kinase (CDK) inhibitory protein, is rapidly reduced at the G1/S transition phase when the cell cycle pause ceases. In this study, we demonstrated that two posttranslational mechanisms were involved in p27(Kip1) breakdown: degradation via the ubiquitin (Ub)-proteasome pathway and proteolytic processing that rapidly eliminates the cyclin-binding domain. We confirmed that p27(Kip1) was ubiquitinated in vitro as well as in vivo. The p27(Kip1) -ubiquitination activity was higher at the G1/S boundary than during the G0/G1 phase, and p27(Kip1) ubiquitination was reduced significantly when the lysine residues at positions 134, 153, and 165 were replaced by arginine, suggesting that these lysine residues are the targets for Ub conjugation. In parallel with its Ub-dependent degradation, p27(Kip1) was processed rapidly at its N terminus, reducing its molecular mass from 27 to 22 kDa, by a ubiquitination-independent but adenosine triphosphate (ATP)-dependent mechanism with higher activity during the S than the G0/G1 phase. This 22-kDa intermediate had no cyclin-binding domain at its N terminus and virtually no CDK2 kinase inhibitory activity. These results suggest that p27(Kip1) is eliminated by two independent mechanisms, ubiquitin-mediated degradation and ubiquitin-independent processing, during progression from the G1 to S phase.
Insights
The cell cycle protein p27(Kip1) is rapidly degraded during the G1/S transition through two independent pathways: ubiquitin-proteasome degradation and N-terminal processing, ensuring cell cycle progression.
Area of Science:
- Cell Biology
- Molecular Biology
- Biochemistry
Background:
- p27(Kip1) is a cyclin-dependent kinase (CDK) inhibitor that regulates cell cycle progression.
- Its intracellular levels decrease at the G1/S transition, allowing the cell cycle to proceed.
Purpose of the Study:
- To investigate the posttranslational mechanisms responsible for p27(Kip1) degradation.
- To elucidate the roles of ubiquitination and proteolytic processing in p27(Kip1) regulation.
Main Methods:
- In vitro and in vivo ubiquitination assays.
- Site-directed mutagenesis of lysine residues in p27(Kip1).
- Analysis of p27(Kip1) processing and kinase inhibitory activity.
Main Results:
- p27(Kip1) undergoes both ubiquitin-proteasome degradation and N-terminal proteolytic processing.
- Ubiquitination targets specific lysine residues (134, 153, 165) and is elevated at the G1/S boundary.
- Proteolytic processing generates a 22-kDa fragment lacking cyclin-binding and CDK inhibitory activity, occurring independently of ubiquitination.
Conclusions:
- p27(Kip1) is eliminated via two distinct, parallel pathways during G1/S phase progression.
- These mechanisms ensure the timely removal of p27(Kip1) to facilitate cell cycle advancement.
Related Concept Videos
The Proteasome
In this pathway, the target proteins are first tagged with small proteins called ubiquitin. A series of enzymes carry out the ubiquitination of the target proteins - E1 (ubiquitin-activating enzyme), E2 (ubiquitin-conjugating enzyme), and E3...
Regulated Protein Degradation
Protein degradation plays two important roles in the cells. It helps to protect cells from misfolded or damaged proteins before they lead to a...
The Proteasome
In this pathway, the target proteins are first tagged with small proteins called ubiquitin. A series of enzymes carry out the ubiquitination of the target proteins - E1 (ubiquitin-activating enzyme), E2 (ubiquitin-conjugating enzyme), and E3...
Regulated Protein Degradation
Protein degradation plays two important roles in the cells. It helps to protect cells from misfolded or damaged proteins before they lead to a...
The Proteasome
In this pathway, the target proteins are first tagged with small proteins called ubiquitin. This involves participation of a series of enzymes including— E1 (ubiquitin-activating enzyme), E2 (ubiquitin-conjugating enzyme), and E3 (ubiquitin...
Regulation of Expression at Multiple Steps

