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Nuclear Magnetic Resonance Spectroscopy for the Identification of Multiple Phosphorylations of Intrinsically Disordered Proteins
Published on: December 27, 2016
NMR structure of phospho-tyrosine signaling complexes
C B Post1, B S Gaul, E Z Eisenmesser
1Department of Medicinal Chemistry, Purdue University, West Lafayette IN 47907-1333, USA. cpb@stella.bio.purdue.edu
Abstract:
A structural basis for activation and substrate specificity of src tyrosine kinases, and regulation of protein-protein association by tyrosine phosphorylation is described. Lyn, a src-family tyrosine kinase, recognizes and phosphorylates the immunoreceptor tyrosine-based activation motif, ITAM, a critical component in transmembrane signal transduction in hemopoietic cells. The structure of an ITAM peptide substrate bound to an active form of Lyn tyrosine kinase was determined by high-resolution NMR, and a model of the complex was generated using the crystallographic structure of Lck, a closely related Src-family kinase. The results provide a rationale for the conserved ITAM residues and specificity of Lyn, and suggest that substrate plays a role in stabilizing the kinase conformation optimal for catalysis. It is our hope that the Lck-ITAM peptide model complex will be useful in aiding structure-based drug design efforts that target substrate binding determinants in the design. Concerning the regulation of protein-protein association, we report on a complex between erythrocyte band 3 and two glycolytic enzymes, aldolase and glyceraldehyde-3-phosphate dehydrogenase. The formation of this complex is negatively regulated by tyrosine phosphorylation of band 3 by p72syk tyrosine kinase. In red blood cells, this association results in a decrease in glycolysis due to competitive inhibition of the glycolytic enzymes. The structure of band 3 recognized by the glycolytic enzymes was determined by solution NMR, and found to be a loop structure with tyrosine centrally positioned and excluded from intermolecular contact. This phosphorylation sensitive interaction, or PSI, loop may be the basis of a general mechanism for negative regulation through tyrosine phosphorylation.
Insights
Structural studies reveal how Lyn tyrosine kinase activates and recognizes substrates like ITAM. It also shows how tyrosine phosphorylation regulates protein interactions, impacting glycolysis in red blood cells.
Area of Science:
- Biochemistry
- Molecular Biology
- Structural Biology
Background:
- Src-family tyrosine kinases, including Lyn, are crucial for signal transduction in hemopoietic cells.
- Tyrosine phosphorylation plays a key role in regulating protein-protein interactions and cellular processes.
- The immunoreceptor tyrosine-based activation motif (ITAM) is vital for transmembrane signaling.
Purpose of the Study:
- To elucidate the structural basis for Lyn tyrosine kinase activation and substrate specificity.
- To understand the mechanism of protein-protein association regulation by tyrosine phosphorylation.
- To provide insights for structure-based drug design targeting tyrosine kinases.
Main Methods:
- High-resolution Nuclear Magnetic Resonance (NMR) spectroscopy to determine the structure of an ITAM peptide bound to Lyn.
- Generation of a complex model using crystallographic data of Lck, a related Src-family kinase.
- Solution NMR to determine the structure of erythrocyte band 3 interacting with glycolytic enzymes.
Main Results:
- The structure of the Lyn-ITAM complex provides a rationale for ITAM residue conservation and Lyn specificity.
- Substrate binding appears to stabilize the kinase conformation for optimal catalysis.
- A phosphorylation-sensitive interaction (PSI) loop in band 3 regulates interactions with glycolytic enzymes, impacting glycolysis.
Conclusions:
- Structural insights into Lyn kinase and its substrates can guide drug design for kinase inhibitors.
- Tyrosine phosphorylation of band 3 by p72syk negatively regulates interactions with glycolytic enzymes.
- The PSI loop represents a potential general mechanism for regulating protein interactions via tyrosine phosphorylation.
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