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Next Generation Sequencing for the Detection of Actionable Mutations in Solid and Liquid Tumors
Published on: September 20, 2016
P16 gene deletions and point mutations in patients with agnogenic myeloid metaplasia (AMM)
1Division of Hematology and Oncology, Brookdale University Hospital and Medical Center, Brooklyn, NY 11212, USA.
Abstract:
Studies of p16 alterations with homozygous deletions and mutation analysis were done in 32 patients with agnogenic myeloid metaplasia (AMM) including six patients in leukemic phase. No homozygous deletions were found and, one patient was found to have a shift band in exon 2C fragment by PCR-SSCP analysis. Further sequence analysis demonstrated that the mutated band was a point mutation of G to A in exon 2 codon 140 (GCG-->ACG) causing an amino acid substitution of alanine to threonine demonstrating this patient either carried an mutated gene in one allele as a polymorphism (heterozygous carrier of a mutant p16 gene) or carried a mutant p16 gene clone. This study demonstrates that p16 alterations with homozygous deletions and mutations were very rare in patients with AMM. A single patient found to have a shifted band by PCR-SSCP may be represented as a coincidence or as a polymorphism with a heterozygous carrier of mutated p16 gene, predisposable to AMM or as a mutant p16 gene which can be infrequently observed in this disease.
Insights
p16 gene alterations are rare in agnogenic myeloid metaplasia (AMM). A single patient showed a p16 mutation, possibly a polymorphism or rare clone, suggesting limited involvement of p16 in AMM development.
Area of Science:
- Oncology
- Genetics
- Hematology
Background:
- Agnogenic myeloid metaplasia (AMM) is a myeloproliferative neoplasm.
- The role of p16 gene alterations in AMM pathogenesis is not well-defined.
Purpose of the Study:
- To investigate the frequency of p16 gene alterations, including homozygous deletions and mutations, in patients with AMM.
Main Methods:
- Analysis of p16 gene alterations in 32 AMM patients.
- Utilized PCR-SSCP and sequence analysis to detect mutations.
Main Results:
- No homozygous deletions of the p16 gene were identified.
- One patient exhibited a p16 point mutation (G to A) in exon 2, resulting in an alanine to threonine substitution.
- This mutation was potentially a heterozygous polymorphism or a rare mutant clone.
Conclusions:
- p16 gene alterations (homozygous deletions and mutations) are infrequent in agnogenic myeloid metaplasia.
- The observed mutation may represent a polymorphism or a rare event, with limited implications for AMM development.
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