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Monitoring Activation of the Antiviral Pattern Recognition Receptors RIG-I And PKR By Limited Protease Digestion and Native PAGE
Published on: July 29, 2014
DRBP76, a double-stranded RNA-binding nuclear protein, is phosphorylated by the interferon-induced protein kinase,
1Department of Molecular Biology, Lerner Research Institute, The Cleveland Clinic Foundation, Cleveland, Ohio 44195, USA.
Abstract:
The interferon-induced double-stranded RNA-activated protein kinase PKR is the prototype of a class of double-stranded (dsRNA)-binding proteins (DRBPs) which share a dsRNA-binding motif conserved from Drosophila to humans. Here we report the purification of DRBP76, a new human member of this class of proteins. Sequence from the amino terminus of DRBP76 matched that of the M phase-specific protein, MPP4. DRBP76 was also cloned by the yeast two-hybrid screening of a cDNA library using a mutant PKR as bait. Analysis of the cDNA sequence revealed that it is the full-length version of MPP4, has a bipartite nuclear localization signal, two motifs that can mediate interactions with both dsRNA and PKR, five epitopes for potential M phase-specific phosphorylation, two potential sites for phosphorylation by cyclin-dependent kinases, a RG2 motif present in many RNA-binding proteins and predicts a protein of 76 kDa. DsRNA and PKR interactions of DRBP76 were confirmed by analysis of in vitro translated and purified native proteins. Cellular expression of an epitope-tagged DRBP76 demonstrated its nuclear localization, and its co-immunoprecipitation with PKR demonstrated that the two proteins interact in vivo. Finally, purified DRBP76 was shown to be a substrate of PKR in vitro, indicating that this protein's cellular activities may be regulated by PKR-mediated phosphorylation.
Insights
Researchers identified DRBP76, a novel human double-stranded RNA-binding protein (DRBP). This protein interacts with PKR and is phosphorylated by it, suggesting PKR regulates DRBP76 cellular activities.
Area of Science:
- Molecular Biology
- Cell Biology
- Virology
Background:
- The interferon-induced protein kinase PKR is a key regulator of cellular responses to viral infection.
- PKR belongs to a class of double-stranded RNA-binding proteins (DRBPs) characterized by a conserved dsRNA-binding motif.
- Understanding the interactions and functions of DRBPs is crucial for deciphering cellular defense mechanisms.
Purpose of the Study:
- To identify and characterize novel human double-stranded RNA-binding proteins (DRBPs).
- To investigate the interaction between the newly identified DRBP76 and the protein kinase PKR.
- To elucidate the potential regulatory role of PKR in the cellular functions of DRBP76.
Main Methods:
- Purification and sequencing of DRBP76 from human cells.
- Yeast two-hybrid screening using a mutant PKR as bait.
- In vitro binding assays with dsRNA and PKR.
- Analysis of epitope-tagged DRBP76 localization and co-immunoprecipitation with PKR.
- In vitro phosphorylation assays using purified DRBP76 and PKR.
Main Results:
- DRBP76 was identified as a novel human DRBP, also known as MPP4.
- DRBP76 contains domains for dsRNA and PKR interaction and is localized in the nucleus.
- DRBP76 interacts with PKR both in vitro and in vivo.
- PKR phosphorylates DRBP76 in vitro, indicating a regulatory relationship.
Conclusions:
- DRBP76 is a novel human double-stranded RNA-binding protein that interacts with PKR.
- The interaction and phosphorylation of DRBP76 by PKR suggest a role for PKR in regulating DRBP76's cellular functions.
- This discovery expands the known network of PKR interactions and potential cellular regulatory pathways.
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