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Application of Stopped-flow Kinetics Methods to Investigate the Mechanism of Action of a DNA Repair Protein
Published on: April 1, 2010
Dissociation of mismatch recognition and ATPase activity by hMSH2-hMSH3
T Wilson1, S Guerrette, R Fishel
1Genetics and Molecular Biology Program, Department of Microbiology and Immunology, Kimmel Cancer Center, Thomas Jefferson University, Philadelphia, Pennsylvania 19107, USA.
Abstract:
MSH2-MSH3 directs the repair of insertion/deletion loops of up to 13 nucleotides in vivo and in vitro. To examine the biochemical basis of this repair specificity, we characterized the mispair binding and ATPase activity of hMSH2-hMSH3. The ATPase was found to be regulated by a mismatch-stimulated ADP --> ATP exchange, which induces a conformational transition by the protein complex. We demonstrated strong binding of hMSH2-hMSH3 to an insertion/deletion loop containing 24 nucleotides that is incapable of provoking ADP --> ATP exchange, suggesting that mismatch recognition appears to be necessary but not sufficient to induce the intrinsic ATPase. These studies support the idea that hMSH2-hMSH3 functions as an adenosine nucleotide-regulated molecular switch that must be activated by mismatched nucleotides for classical mismatch repair to occur.
Insights
The human MutS homolog 2-MutS homolog 3 (hMSH2-hMSH3) complex repairs DNA insertion/deletion loops. Mismatch recognition is necessary but not sufficient to activate its ATPase for repair.
Area of Science:
- Molecular Biology
- DNA Repair Mechanisms
- Protein Biochemistry
Background:
- The MSH2-MSH3 complex plays a crucial role in DNA mismatch repair, specifically targeting insertion/deletion loops.
- Understanding the biochemical mechanisms governing MSH2-MSH3's specificity and activity is vital for comprehending genome stability.
Purpose of the Study:
- To investigate the biochemical basis of hMSH2-hMSH3's specificity in repairing insertion/deletion loops.
- To characterize the mispair binding and ATPase activity of the hMSH2-hMSH3 complex.
Main Methods:
- Biochemical assays to characterize protein-DNA interactions.
- ATPase activity assays to measure ADP/ATP exchange.
- Analysis of hMSH2-hMSH3 binding to varying lengths of insertion/deletion loops.
Main Results:
- hMSH2-hMSH3 efficiently repairs insertion/deletion loops up to 13 nucleotides.
- ATPase activity is regulated by mismatch-stimulated ADP to ATP exchange, inducing conformational changes.
- Strong binding to a 24-nucleotide loop occurred without triggering ADP/ATP exchange, indicating mismatch recognition alone is insufficient for activation.
Conclusions:
- hMSH2-hMSH3 acts as an adenosine nucleotide-regulated molecular switch for DNA mismatch repair.
- Activation of the hMSH2-hMSH3 ATPase requires specific nucleotide mismatches, not just binding.
- These findings elucidate the regulatory mechanism controlling MSH2-MSH3's function in maintaining genomic integrity.
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