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Updated: Aug 9, 2026

Polysome Fractionation and Analysis of Mammalian Translatomes on a Genome-wide Scale
Published on: May 17, 2014
Translational control by an upstream open reading frame in the HER-2/neu transcript
S J Child1, M K Miller, A P Geballe
1Divisions of Human Biology and Clinical Research, C2-023, Fred Hutchinson Cancer Research Center, Seattle, Washington 98109, USA.
Abstract:
Overexpression of the HER-2 (neu, erbB-2) receptor results in cellular transformation and is associated with a variety of human cancers. Multiple mechanisms, including gene amplification and transcriptional, post-transcriptional, and translational controls contribute to the regulation of HER-2 expression. One of the components of these regulatory mechanisms is a short upstream open reading frame (uORF) in the HER-2 mRNA that represses downstream translation in a variety of cell types. Here we explore the mechanism by which this uORF exerts its inhibitory effect. As judged by comparisons of protein and mRNA abundance and by polysomal distribution analyses, the uORF represses translation of the HER-2 cistron or of a heterologous reporter gene. Despite its conservation among mammalian species, the peptide sequence of the uORF is not required for this inhibitory effect. Rather, the majority of ribosomes that load on the HER-2 mRNA most likely translate the uORF and are then unable to reinitiate at the downstream AUG codon, in part due to the short intercistronic spacing. A minority of ribosomes gain access to the HER-2 initiation codon either by leaky scanning past the upstream AUG codon or by reinitiating after having translated the uORF despite the short intercistronic region. These results suggest that the HER-2 uORF controls synthesis of this oncoprotein by limiting ribosomal access to downstream initiation sites.
Insights
A short sequence in HER-2 mRNA, an upstream open reading frame (uORF), inhibits protein production. This HER-2 uORF limits ribosome access to translation start sites, controlling oncoprotein synthesis.
Area of Science:
- Molecular Biology
- Cancer Research
- Gene Regulation
Background:
- HER-2 (neu, erbB-2) receptor overexpression drives cellular transformation and is linked to various human cancers.
- HER-2 expression is tightly regulated by multiple mechanisms, including gene amplification and post-transcriptional/translational controls.
Purpose of the Study:
- To elucidate the inhibitory mechanism of a short upstream open reading frame (uORF) within HER-2 mRNA.
- To understand how this HER-2 uORF regulates downstream translation and oncoprotein synthesis.
Main Methods:
- Analysis of protein and mRNA abundance.
- Polysomal distribution analyses.
- Translation assays using HER-2 cistrons and heterologous reporter genes.
Main Results:
- The HER-2 uORF significantly represses translation of downstream genes, independent of its peptide sequence.
- Most ribosomes translating the uORF fail to reinitiate translation at the downstream start codon due to short intercistronic spacing.
- A small fraction of ribosomes access the HER-2 initiation codon via leaky scanning or reinitiation.
Conclusions:
- The HER-2 uORF acts as a translational repressor by limiting ribosomal access to initiation sites.
- This mechanism provides a crucial control point for the synthesis of the HER-2 oncoprotein.
Related Concept Videos
Translation
Translation is the process of synthesizing proteins from the genetic information carried by messenger RNA (mRNA). Following transcription, it constitutes the final step in the expression of genes. This process is carried out by ribosomes, complexes of protein and specialized RNA molecules. Ribosomes, transfer RNA (tRNA), and other proteins produce a chain of amino acids—the polypeptide—as the end product of translation.
Translation Produces the Building Blocks of Life
Initiation of Translation
First, the initiator tRNA must be selected from the pool of elongator tRNAs by eukaryotic initiation factor 2 (eIF2). The initiator tRNA (Met-tRNAi) has conserved sequence elements including modified bases at...
Regulation of Expression Occurs at Multiple Steps
Transcription results in the generation of precursor (pre-mRNA) that consists of both exons and introns, which needs further processing before being translated to a...
Leaky Scanning
Translation
Translation is the process of synthesizing proteins from the genetic information carried by messenger RNA (mRNA). Following transcription, it constitutes the final step in the expression of genes. This process is carried out by ribosomes, complexes of protein and specialized RNA molecules. Ribosomes, transfer RNA (tRNA), and other proteins produce a chain of amino acids—the polypeptide—as the end product of translation.
Translation Produces the Building Blocks of Life
Translational Regulation

