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Targeted Next-generation Sequencing and Bioinformatics Pipeline to Evaluate Genetic Determinants of Constitutional Disease
Published on: April 4, 2018
Molecular analysis of cystinosis: probable Irish origin of the most common French Canadian mutation
J McGowan-Jordan1, K Stoddard, L Podolsky
1Department of Genetics, Children's Hospital of Eastern Ontario, Ottawa, Canada.
Insights
Infantile nephropathic cystinosis genetic studies reveal a significant Irish contribution to the French Canadian population. This finding highlights the genetic diversity within French Canadians, impacting cystinosis (CTNS) gene research.
Area of Science:
- Genetics
- Molecular Biology
- Pediatric Nephrology
Background:
- Infantile nephropathic cystinosis is an autosomal recessive lysosomal storage disorder.
- It presents with failure to thrive, rickets, and proximal renal tubular acidosis.
- The CTNS gene, located on chromosome 17p13, encodes a lysosomal membrane protein.
Purpose of the Study:
- To investigate the genetic origins of infantile nephropathic cystinosis in a French Canadian cohort.
- To identify specific mutations and haplotypes associated with the disease in this population.
Main Methods:
- Extensive linkage analysis was performed on a French Canadian cystinosis cohort.
- Haplotype analysis was conducted on affected chromosomes.
- Mutational analysis identified novel and known mutations.
Main Results:
- A founding haplotype was identified in approximately half of the studied French Canadian chromosomes.
- A mutation previously found in Irish cystinotic families was unexpectedly identified in the French Canadian cohort.
- Haplotype analysis of Irish families supported a significant Celtic contribution to French Canadian cystinosis chromosomes.
Conclusions:
- The genetic heterogeneity of the French Canadian population is underscored, with a notable Irish contribution.
- This finding has implications for understanding the genetic basis and epidemiology of cystinosis.
- Recognizing non-Gallic genetic contributions is crucial for accurate population genetics studies.
Abstract:
Infantile nephropathic cystinosis, an autosomal recessive disease characterized by a lysosomal accumulation of cystine, presents as failure to thrive, rickets and proximal renal tubular acidosis. The cystinosis gene, CTNS, which maps to chromosome 17p13, encodes a predicted 55 kDa protein with characteristics of a lysosomal membrane protein. We have conducted extensive linkage analysis in a French Canadian cystinosis cohort identifying a founding haplotype present in approximately half (21/40) of the chromosomes studied. Subsequent mutational analysis, in addition to identifying two novel mutations, has unexpectedly revealed a mutation which has been previously found in Irish (but not French) cystinotic families on these 21 French Canadian chromosomes. Haplotype analysis of two Irish families with this mutation supports the hypothesis that Celtic chromosomes represent an extensive portion of cystinosis chromosomes in French Canada. Our analysis underlines the genetic heterogeneity of the French Canadian population, reflecting a frequently unrecognized contribution from non-Gallic sources including the Irish.
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