Related Experiment Videos
MatrixPlot: visualizing sequence constraints
J Gorodkin1, H H Staerfeldt, O Lund
1Center for Biological Sequence Analysis, Department of Biotechnology, The Technical University of Denmark, Lyngby, Denmark.
Bioinformatics (Oxford, England)
|September 28, 1999
Abstract
Unlabelled:
MatrixPlot is a program for making high-quality matrix plots, such as mutual information plots of sequence alignments and distance matrices of sequences with known three-dimensional coordinates. The user can add information about the sequences (e.g. a sequence logo profile) along the edges of the plot, as well as zoom in on any region in the plot.
Availability:
MatrixPlot can be obtained on request, and can also be accessed online at http://www. cbs.dtu.dk/services/MatrixPlot.
Contact:
gorodkin@cbs.dtu.dk