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Single Nucleotide Polymorphisms-SNPs01:05

Single Nucleotide Polymorphisms-SNPs

A single nucleotide polymorphism or SNP is a single nucleotide variation at a specific genomic position in a large population. It is the most prevalent type of sequence variation found in the human genome. Point mutations that occur in more than 1% of the population qualify as SNPs. These are present once every 1000 nucleotides on an average in the human genome. Replacement of a purine with another purine (A/G) or a pyrimidine with another pyrimidine (C/T) is known as a transition. In contrast,...
Genome-wide Association Studies-GWAS01:11

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Genome-wide association studies or GWAS are used to identify whether common SNPs are associated with certain diseases. Suppose specific SNPs are more frequently observed in individuals with a particular disease than those without the disease. In that case, those SNPs are said to be associated with the disease. Chi-square analysis is performed to check the probability of the allele likely to be associated with the disease.
GWAS does not require the identification of the target gene involved in...
Pharmacogenetic Phenotypes: Alterations in Pharmacokinetics, Drug Targets and Biologic Milieu01:29

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Genetic variations significantly influence drug response through pharmacokinetics, receptor interactions, and biologic milieu modifications. Pharmacokinetic alterations impact drug metabolism and clearance, affecting efficacy and toxicity. Variants in drug-metabolizing enzymes, such as CYP2C9 and CYP2C19, alter drug activation and elimination. For example, CYP2C9 loss-of-function variants require lower warfarin doses to prevent excessive bleeding, while CYP2C19 variants reduce clopidogrel...
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The pharmacogenetics of drug transporters is increasingly recognized as a critical factor influencing interindividual variability in drug absorption, distribution, and elimination. These membrane-bound proteins regulate drugs' movement across cellular barriers by actively pumping them out (efflux) or facilitating their uptake (influx). Among the major transporter families, ATP-binding cassette (ABC) and solute carrier (SLC) transporters play particularly prominent roles. Genetic polymorphisms...
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Genetic polymorphisms in drug targets have emerged as critical determinants of interindividual variability in drug response and toxicity. Pharmacogenomic investigations increasingly focus on identifying these variations to personalize and optimize therapeutic interventions. A drug target may be a receptor, enzyme, or signaling protein involved in pharmacologic responses or disease-related pathways. While early pharmacogenetic studies focused primarily on drug metabolism, current research...
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Advances in genomics have profoundly influenced drug discovery by increasing both the speed and accuracy of pharmaceutical development. Pharmacogenomics, which examines how genetic variation influences drug response, facilitates the identification of novel therapeutic targets and enables patient stratification for personalized treatment. These strategies contribute to improved drug efficacy, minimized adverse effects, and more efficient clinical trial design.Mapping genetic differences...

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High-resolution Melting PCR for Complement Receptor 1 Length Polymorphism Genotyping: An Innovative Tool for Alzheimer's Disease Gene Susceptibility Assessment
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DNA polymorphisms of the apolipoprotein B gene (XbaI, EcoRI, and MspI RFLPs) in Norwegians at risk of atherosclerosis

M Delghandi1, R Thangarajah, M Nilsen

  • 1Department of Morphology, University of Tromsø, Norway. madjid@fagmed.uit.no

Acta Cardiologica
|October 8, 1999
PubMed
Summary
This summary is machine-generated.

Genetic variations in apolipoprotein B (apo B) influence lipid levels and atherosclerosis risk. Specific MspI genotypes and haplotypes correlate with altered total cholesterol and LDL cholesterol in Norwegian subjects.

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Area of Science:

  • Genetics
  • Biochemistry
  • Cardiovascular Disease

Background:

  • Apolipoprotein B (apo B) is crucial for low-density lipoprotein (LDL) structure and receptor binding.
  • Apolipoprotein B gene polymorphisms have been linked to variations in serum lipid levels across populations.
  • Understanding these genetic associations is vital for assessing atherosclerosis risk.

Purpose of the Study:

  • To investigate the frequency of XbaI, EcoRI, and MspI polymorphisms in the apo B gene.
  • To determine the influence of these polymorphisms and their haplotypes on lipid levels in Norwegians.
  • To assess the association between apo B gene variations and atherosclerosis risk.

Main Methods:

  • Genotyping of XbaI, EcoRI, and MspI restriction sites in the apo B gene.
  • Analysis of serum lipid levels, including total cholesterol (TC) and LDL cholesterol (LDLC).
  • Statistical association studies between apo B genotypes, haplotypes, and lipid profiles in cases and controls.

Main Results:

  • The M allele of MspI was more frequent in cases with high TC, LDLC, and apo B.
  • MspI genotypes showed a significant association with TC, LDLC, and apo B levels in cases.
  • Haplotypes with specific amino acid changes (Lys/Arg) were linked to lower serum lipids in at-risk individuals.

Conclusions:

  • Variations in the apo B gene, particularly those altering charged amino acids, impact circulating blood lipids.
  • These genetic variations may contribute to the risk of developing atherosclerosis.
  • The study highlights the role of specific apo B gene polymorphisms in lipid metabolism and cardiovascular risk.