Related Experiment Video
Updated: Aug 10, 2026

Optimization of Synthetic Proteins: Identification of Interpositional Dependencies Indicating Structurally and/or Functionally Linked Residues
Published on: July 14, 2015
Linkage identification by non-monotonicity detection for overlapping functions
1Graduate School of Engineering, Hokkaido University, North 13, West 8, Kita-ku, Sapporo 606-8628, JAPAN. munetomo@eng.hokudai.ac.jp
Abstract:
This paper presents the linkage identification by non-monotonicity detection (LIMD) procedure and its extension for overlapping functions by introducing the tightness detection (TD) procedure. The LIMD identifies linkage groups directly by performing order-2 simultaneous perturbations on a pair of loci to detect monotonicity/non-monotonicity of fitness changes. The LIMD can identify linkage groups with at most order of k when it is applied to O(2(k)) strings. The TD procedure calculates tightness of linkage between a pair of loci based on the linkage groups obtained by the LIMD. By removing loci with weak tightness from linkage groups, correct linkage groups are obtained for overlapping functions, which were considered difficult for linkage identification procedures.
Related Concept Videos
Ligand Binding and Linkage
Ligand Binding and Linkage
Functional Classification of Joints
The functional classification of joints is determined by the amount of mobility between the adjacent bones. Joints are functionally classified as a synarthrosis or immobile joint, an amphiarthrosis or slightly moveable joint, or as a diarthrosis, a freely moveable joint. Fibrous and cartilaginous joints can be functionally classified as either synarthroses or amphiarthroses, whereas all synovial joints are classified as diarthroses.
Synarthrosis
An immobile...
Application of Nonlinear Inequalities
Continuity of a Function
Continuity for Functions of Multiple Variables

