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Related Experiment Videos

The genome sequence DataBase.

C Harger1, G Chen, A Farmer

  • 1National Center for Genome Resources, 1800 Old Pecos Trail, Suite A, Santa Fe, NM 87505, USA. cah@ncgr.org

Nucleic Acids Research
|December 11, 1999
PubMed
Summary
This summary is machine-generated.

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The Genome Sequence DataBase (GSDB) now offers enhanced sequence analysis tools and Mac compatibility. While no longer accepting submissions, it maintains up-to-date nucleotide sequence data through nightly updates.

Area of Science:

  • Bioinformatics
  • Genomics
  • Database Management

Background:

  • The Genome Sequence DataBase (GSDB) is a critical resource for accessing publicly available nucleotide sequences and associated data.
  • Maintaining data integrity and accessibility is crucial for scientific research.

Purpose of the Study:

  • To report significant updates and changes to the Genome Sequence DataBase (GSDB) over the past year.
  • To inform researchers about the current capabilities and accessibility of GSDB.

Main Methods:

  • GSDB ceased accepting direct researcher submissions, transferring ownership to GenBank.
  • Sequence analysis capabilities were expanded to include Smith-Waterman and Frame Search algorithms.
  • Sequence Viewer was made available for Mac users.

Related Experiment Videos

  • Data is continuously updated via nightly acquisitions from the International Nucleotide Sequence Database Collaboration (IC) databases.

    • Main Results:

    • GSDB has transitioned its data submission model.
    • Enhanced analytical tools and cross-platform accessibility (Mac users) are now available.
    • The database content remains current and comprehensive through automated data integration.

    Conclusions:

    • GSDB continues to be a valuable, up-to-date resource for nucleotide sequence analysis and retrieval.
    • Despite changes in submission policy, GSDB remains accessible and enhanced for researchers worldwide.