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5S ribosomal RNA database Y2K.

M Szymanski1, M Z Barciszewska, J Barciszewski

  • 1Institute of Bioorganic Chemistry of the Polish Academy of Sciences, Noskowskiego 12, 61704 Poznan, Poland.

Nucleic Acids Research
|December 11, 1999
PubMed
Summary
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The updated Y2K database now includes 1985 ribosomal 5S ribonucleic acid (5S rRNA) and 5S ribosomal DNA (5S rDNA) sequences. This comprehensive collection is categorized by the taxonomic origin of the source organisms for easy access.

Area of Science:

  • Molecular Biology
  • Bioinformatics
  • Genomics

Background:

  • Ribosomal 5S ribonucleic acids (5S rRNA) and their genes (5S rDNA) are crucial components of the ribosome.
  • Databases are essential for organizing and accessing biological sequence data.

Purpose of the Study:

  • To present the updated Y2K version of the 5S rRNA and 5S rDNA database.
  • To provide a comprehensive and taxonomically organized collection of 5S rRNA and 5S rDNA sequences.

Main Methods:

  • Database compilation and curation.
  • Sequence data collection from diverse organisms.
  • Taxonomic classification of sequences.

Main Results:

  • The Y2K database version contains 1985 primary structures of 5S rRNA and 5S rDNA.

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  • Sequences are categorized into archaebacterial (60), eubacterial (470), plastid (63), mitochondrial (9), and eukaryotic (1383) groups.
  • The database is accessible online at http://rose.man/poznan.pl/5SData/index.html.

    • Conclusions:

    • The updated database serves as a valuable resource for researchers studying 5S rRNA and 5S rDNA.
    • The taxonomic organization facilitates comparative and evolutionary analyses.
    • This resource supports research in molecular biology, evolution, and genomics.