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Myc induces the nucleolin and BN51 genes: possible implications in ribosome biogenesis
P J Greasley1, C Bonnard, B Amati
1Cellular Growth Control Unit, Swiss Institute for Experimental Cancer Research (ISREC), 155 ch. des Boveresses, CH-1066 Epalinger, Switzerland.
Abstract:
The c-Myc oncoprotein and its dimerization partner Max bind the DNA core consensus sequence CACGTG (E-box) and activate gene transcription. However, the low levels of induction have hindered the identification of novel Myc target genes by differential screening techniques. Here, we describe a computer-based pre-selection of candidate Myc/Max target genes, based on two restrictive criteria: an extended E-box consensus sequence for Myc/Max binding and the occurrence of this sequence within a potential genomic CpG island. Candidate genes selected by these criteria were evaluated experimentally for their response to Myc. Two Myc target genes are characterized here in detail. These encode nucleolin, an abundant nucleolar protein, and BN51, a co-factor of RNA polymerase III. Myc activates transcription of both genes via E-boxes located in their first introns, as seen for several well-characterized Myc targets. For both genes, mutation of the E-boxes abolishes transcriptional activation by Myc as well as repression by Mad1. In addition, the BN51 promoter is selectively activated by Myc and not by USF, another E-box-binding factor. Both nucleolin and BN51 are implicated in the maturation of ribosomal RNAs, albeit in different ways. We propose that Myc, via regulation of these and probably many other transcriptional targets, may be an important regulator of ribosome biogenesis.
Insights
Researchers identified new Myc target genes, nucleolin and BN51, using a computational approach. Myc regulates these genes, which are involved in ribosome biogenesis, suggesting Myc
Area of Science:
- Molecular Biology
- Oncology
- Gene Regulation
Background:
- The c-Myc oncoprotein and its partner Max bind DNA E-boxes to activate transcription.
- Identifying novel Myc target genes is challenging due to low induction levels.
- Myc plays a crucial role in cell growth and proliferation.
Purpose of the Study:
- To develop a computational method for pre-selecting candidate Myc/Max target genes.
- To experimentally validate candidate genes and characterize their regulation by Myc.
- To investigate the role of Myc in regulating ribosome biogenesis.
Main Methods:
- Computer-based pre-selection of candidate genes using extended E-box consensus and CpG island criteria.
- Experimental evaluation of candidate gene responses to Myc.
- Mutation analysis of E-boxes to assess transcriptional activation and repression by Myc and Mad1.
Main Results:
- Two novel Myc target genes, nucleolin and BN51, were identified and validated.
- Myc activates transcription of nucleolin and BN51 via E-boxes in their first introns.
- Mutating E-boxes abolished Myc-mediated activation and Mad1-mediated repression.
- The BN51 promoter was selectively activated by Myc, not USF.
Conclusions:
- Nucleolin and BN51 are Myc target genes involved in ribosomal RNA maturation.
- Myc's regulation of these genes suggests a significant role in ribosome biogenesis.
- The computational pre-selection strategy is effective for identifying novel Myc targets.