Deregulation of mitogen-activated protein kinase at low pH due to a structural rearrangement of activation segment

A A Tokmakov1, K I Sato, Y Fukami

  • 1Laboratory of Molecular Biology, Biosignal Research Center, Kobe University, Nada, Kobe, Japan. tokmak@kobe-u.ac.jp

Insights

Mitogen-activated protein kinase (MAPK) autophosphorylation increases at acidic pH, while its activity on other proteins decreases. This pH-dependent conformational change affects MAPK

Area of Science:

  • Biochemistry
  • Enzymology
  • Protein Kinase Regulation

Background:

  • Mitogen-activated protein kinase (MAPK) is a crucial signaling enzyme.
  • Enzyme activity is often modulated by environmental factors like pH.
  • Understanding MAPK regulation is vital for cellular signaling research.

Purpose of the Study:

  • To investigate the effect of pH on MAPK autophosphorylation and substrate phosphorylation.
  • To elucidate the structural basis for pH-dependent changes in MAPK activity.

Main Methods:

  • Recombinant MAPK autophosphorylation assays at varying pH.
  • Myelin basic protein phosphorylation assays.
  • Immunoprecipitation, ELISA, kinetic analysis, and reversible phosphorylation assays.

Main Results:

  • MAPK autophosphorylation was stimulated at weakly acidic pH (5.5-6.0).
  • Phosphorylation of myelin basic protein was inhibited below pH 6.0.
  • Low pH induced a conformational change in the MAPK activation segment, favoring autophosphorylation but inhibiting exogenous substrate phosphorylation.

Conclusions:

  • Acidic pH promotes a stable, low-activity conformation of MAPK.
  • This conformation facilitates intramolecular autophosphorylation while blocking the catalytic center for exogenous substrates.
  • pH-dependent conformational changes are critical for regulating MAPK activity and signaling.

Related Concept Videos

Protein Kinases and Phosphatases02:54

Protein Kinases and Phosphatases

Proteins undergo chemical modifications that trigger changes in the charge, structure, and conformation of the proteins. Phosphorylation, acetylation, glycosylation, nitrosylation, ubiquitination, lipidation, methylation, and proteolysis are various protein modifications that regulate protein activity. Such modifications are usually enzyme-driven.
Protein kinases
Many proteins in the cell are regulated by phosphorylation, the addition of a phosphate group. A family of enzymes called kinases...
Amplifying Signals via Enzymatic Cascade01:22

Amplifying Signals via Enzymatic Cascade

When a ligand binds to a cell-surface receptor, the receptor's intracellular domain changes shape, which may either activate its enzyme function or allow its binding to other molecules. The initial signal is amplified by most signal transduction pathways. This means that a single ligand molecule can activate multiple molecules of a downstream target. Proteins that relay a signal are most commonly phosphorylated at one or more sites, activating or inactivating the protein. Kinases catalyze the...
Receptor Tyrosine Kinases01:26

Receptor Tyrosine Kinases

Receptor tyrosine kinases or RTKs are membrane-bound receptors that phosphorylate specific tyrosine on protein substrates. RTKs regulate cellular growth, differentiation, survival, and migration. They contain an extracellular ligand binding domain, a transmembrane domain, and a cytosolic tail with intrinsic kinase activity. Several extracellular signaling molecules activate RTKs in one or more ways and relay the signal downstream. Ligands such as platelet-derived growth factor (PDGF) or...
MAPK Signaling Cascades01:07

MAPK Signaling Cascades

Mitogen-activated protein kinase, or MAPK pathway, activates three sequential kinases to regulate cellular responses such as proliferation, differentiation, survival, and apoptosis. The canonical MAPK pathway starts with a mitogen or growth factor binding to an RTK. The activated RTKs stimulate Ras, which recruits Raf or MAP3 Kinase (MAPKKK), the first kinase of the MAPK signaling cascade. Raf further phosphorylates and activates MEK or MAP2 Kinases (MAPKK), which in turn phosphorylates MAP...
The JAK-STAT Signaling Pathway01:20

The JAK-STAT Signaling Pathway

Several cytokine receptors have tightly bound Janus kinase or JAK proteins attached at their cytosolic tail. Small signaling molecules such as cytokines, growth hormones, or prolactins bind to the cytokine receptors and initiate their dimerization. The dimerization brings the cytosolic JAKs together that trans-phosphorylate and activates each other. The activated JAKs now phosphorylate cytosolic tails of the cytokine receptors, which serve as binding sites for adaptor proteins such as  SH2...
Calmodulin-dependent Signaling01:16

Calmodulin-dependent Signaling

Calmodulin (CaM) is a calcium-binding protein in eukaryotes that controls various calcium-regulated cellular processes. It has four calcium-binding sites that bind calcium to form the calcium-calmodulin ( Ca2+-CaM) complex. GPCR stimulation increases the calcium levels in the cells that bind to CaM and induces a conformational change.
The Ca2+-CaM complex does not have enzymatic activity by itself. Instead, the complex binds downstream target proteins, including membrane proteins or enzymes,...