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Yeast As a Chassis for Developing Functional Assays to Study Human P53
Published on: August 4, 2019
The alpha-helical FXXPhiPhi motif in p53: TAF interaction and discrimination by MDM2
1Department of Chemistry, Harvard University, Cambridge, MA 02138, USA.
Abstract:
Transcriptional activation domains share little sequence homology and generally lack folded structures in the absence of their targets, aspects that have rendered activation domains difficult to characterize. Here, a combination of biochemical and nuclear magnetic resonance experiments demonstrates that the activation domain of the tumor suppressor p53 has an FXXPhiPhi motif (F, Phe; X, any amino acids; Phi, hydrophobic residues) that folds into an alpha-helix upon binding to one of its targets, hTAF(II)31 (a human TFIID TATA box-binding protein-associated factor). MDM2, the cellular attenuator of p53, discriminates the FXXPhiPhi motif of p53 from those of NF-kappaB p65 and VP16 and specifically inhibits p53 activity. Our studies support the notion that the FXXPhiPhi sequence is a general alpha-helical recognition motif for hTAF(II)31 and provide insights into the mechanistic basis for regulation of p53 function.
Insights
The p53 tumor suppressor
Area of Science:
- Molecular Biology
- Protein Structure and Function
- Cancer Biology
Background:
- Transcriptional activation domains (TADs) are crucial for gene regulation but are difficult to study due to low sequence homology and lack of inherent structure.
- The tumor suppressor p53's activity is regulated by cellular factors, including MDM2, which inhibits its function.
- Understanding the structural basis of TADs is key to deciphering gene transcription regulation.
Purpose of the Study:
- To characterize the structural features of the p53 activation domain and its interaction with target proteins.
- To elucidate the mechanism by which MDM2 regulates p53 activity.
- To identify conserved recognition motifs for transcriptional coactivators.
Main Methods:
- Utilized a combination of biochemical assays and nuclear magnetic resonance (NMR) spectroscopy.
- Investigated the interaction between the p53 activation domain and its target hTAF(II)31.
- Examined the specificity of MDM2 in recognizing different activation domains.
Main Results:
- Identified an FXXPhiPhi motif within the p53 activation domain that forms an alpha-helix upon binding to hTAF(II)31.
- Demonstrated that MDM2 specifically recognizes and inhibits the p53 FXXPhiPhi motif, distinguishing it from similar motifs in NF-kappaB p65 and VP16.
- Established the FXXPhiPhi sequence as a general alpha-helical recognition motif for hTAF(II)31.
Conclusions:
- The FXXPhiPhi motif is a critical structural element in the p53 activation domain, mediating target recognition through alpha-helix formation.
- MDM2's specific inhibition of p53 activity is based on its discrimination of the FXXPhiPhi motif.
- These findings provide mechanistic insights into p53 regulation and highlight a conserved recognition mechanism for transcriptional activation.
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