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Updated: Aug 10, 2026

Enrichment of Extracellular Matrix Proteins from Tissues and Digestion into Peptides for Mass Spectrometry Analysis
Published on: July 23, 2015
Post-translational proteolytic processing of procollagen C-terminal proteinase enhancer releases a metalloproteinase
J D Mott1, C L Thomas, M T Rosenbach
1Department of Radiology, University of California, San Francisco, California 94143-0750, USA. JDMott@lbl.gov
Abstract:
Activity of matrix metalloproteinases (MMP) is regulated by a family of proteins called tissue inhibitors of metalloproteinases (TIMP). Four TIMPs have been cloned, and their molecular weights range from 29,000 to 20,000. By reverse zymography, we have observed a metalloproteinase inhibitor with an apparent molecular weight of 16, 500 from medium conditioned by human brain tumor cells. Antibodies directed against TIMPs failed to react with the 16,500 molecular weight inhibitor, indicating that it was not a truncated form of a known TIMP. The inhibitor was isolated from conditioned medium using affinity and ion exchange chromatography. N-terminal sequences of the inhibitor matched amino acid sequences within the C-terminal domain of a protein known as procollagen C-terminal proteinase enhancer (PCPE). Thus, the inhibitor was named CT-PCPE. Comparison of the N-terminal domain of TIMP with CT-PCPE revealed that both contained six cysteine residues. As in the case of TIMP, reduction and alkylation abolished the inhibitory activity of CT-PCPE. Purified CT-PCPE inhibited MMP-2 with an IC(50) value much greater than that of TIMP-2. This implies that MMPs may not be the physiologic targets for CT-PCPE inhibition. However, these results suggest that CT-PCPE may constitute a new class of metalloproteinase inhibitor.
Insights
A novel metalloproteinase inhibitor, CT-PCPE, was identified in human brain tumor cells. This inhibitor, distinct from tissue inhibitors of metalloproteinases (TIMPs), may represent a new class of MMP inhibitors.
Area of Science:
- Biochemistry
- Molecular Biology
- Oncology
Background:
- Matrix metalloproteinases (MMPs) are crucial enzymes regulated by tissue inhibitors of metalloproteinases (TIMPs).
- Four TIMPs are known, with molecular weights between 20,000 and 29,000.
- Understanding MMP regulation is vital in various biological processes and diseases.
Purpose of the Study:
- To identify and characterize novel metalloproteinase inhibitors.
- To investigate the potential role of these inhibitors in human brain tumor cells.
- To determine if the novel inhibitor is related to known TIMPs.
Main Methods:
- Reverse zymography was used to detect metalloproteinase inhibitor activity.
- Affinity and ion exchange chromatography were employed for inhibitor isolation.
- N-terminal sequencing and comparison with known protein domains were performed.
Main Results:
- A novel inhibitor with an apparent molecular weight of 16,500 was detected in human brain tumor cell conditioned medium.
- Antibodies against known TIMPs did not react with the inhibitor.
- N-terminal sequencing revealed homology to procollagen C-terminal proteinase enhancer (PCPE), leading to the name CT-PCPE.
- CT-PCPE contains six cysteine residues and its activity is abolished by reduction and alkylation, similar to TIMPs.
- Purified CT-PCPE showed weak inhibition of MMP-2 compared to TIMP-2.
Conclusions:
- CT-PCPE is a novel metalloproteinase inhibitor isolated from human brain tumor cells.
- It is structurally distinct from known TIMPs but shares some functional characteristics.
- MMPs may not be the primary physiological targets of CT-PCPE.
- CT-PCPE may represent a new class of metalloproteinase inhibitors with potential implications in cancer biology.
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