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Yeast As a Chassis for Developing Functional Assays to Study Human P53
Published on: August 4, 2019
Mechanism of rescue of common p53 cancer mutations by second-site suppressor mutations
P V Nikolova1, K B Wong, B DeDecker
1Cambridge University Chemical Laboratory and Cambridge Centre for Protein Engineering, MRC Centre, Hills Road, Cambridge CB2 2QH, UK.
Abstract:
The core domain of p53 is extremely susceptible to mutations that lead to loss of function. We analysed the stability and DNA-binding activity of such mutants to understand the mechanism of second-site suppressor mutations. Double-mutant cycles show that N239Y and N268D act as 'global stability' suppressors by increasing the stability of the cancer mutants G245S and V143A-the free energy changes are additive. Conversely, the suppressor H168R is specific for the R249S mutation: despite destabilizing wild type, H168R has virtually no effect on the stability of R249S, but restores its binding affinity for the gadd45 promoter. NMR structural comparisons of R249S/H168R and R249S/T123A/H168R with wild type and R249S show that H168R reverts some of the structural changes induced by R249S. These results have implications for possible drug therapy to restore the function of tumorigenic mutants of p53: the function of mutants such as V143A and G245S is theoretically possible to restore by small molecules that simply bind to and hence stabilize the native structure, whereas R249S requires alteration of its mutant native structure.
Insights
Second-site mutations can restore tumor suppressor p53 (mutant) function. Some suppressors globally stabilize p53 mutants, while others specifically alter mutant structures to restore DNA binding and gene regulation.
Area of Science:
- Molecular Biology
- Biochemistry
- Structural Biology
Background:
- The p53 tumor suppressor protein is frequently inactivated by mutations in its core domain, leading to loss of function.
- Understanding the mechanisms of suppressor mutations is crucial for developing therapeutic strategies targeting p53 mutants.
Purpose of the Study:
- To investigate the mechanisms by which second-site suppressor mutations restore the function of cancer-associated p53 mutants.
- To differentiate between global stability suppressors and mutation-specific suppressors of p53.
Main Methods:
- Analysis of protein stability and DNA-binding activity of wild-type and mutant p53.
- Double-mutant cycle analysis to determine the energetic contributions of suppressor mutations.
- Nuclear Magnetic Resonance (NMR) spectroscopy to compare the structures of wild-type, mutant, and suppressed p53 variants.
Main Results:
- N239Y and N268D mutations act as global stabilizers, increasing the stability of p53 mutants G245S and V143A.
- H168R mutation specifically suppresses the R249S mutation by restoring DNA binding affinity without significantly altering R249S stability.
- NMR data revealed that H168R reverts structural changes induced by the R249S mutation.
Conclusions:
- Suppressor mutations can restore p53 function through distinct mechanisms: global stabilization or specific structural reversion.
- Restoring function of mutants like V143A and G245S may be achievable with small molecules that stabilize the native structure.
- Mutants like R249S may require therapeutic strategies that alter the mutant's specific structure.
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