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Identification of Homologous Recombination Events in Mouse Embryonic Stem Cells Using Southern Blotting and Polymerase Chain Reaction
Published on: November 20, 2018
Atm deficiency causes an increased frequency of intrachromosomal homologous recombination in mice
A J Bishop1, C Barlow, A J Wynshaw-Boris
1Department of Cancer Cell Biology, Harvard School of Public Health, Boston, Massachusetts 02115, USA.
Abstract:
Ataxia telangiectasia (AT) patients have inactivating mutations in both copies of the ATM gene. The ATM protein that the gene encodes is involved in DNA double-strand break (DSB) recognition; in its absence, p53 response to DSBs is delayed and reduced. In addition, AT patients have a high propensity for cancer, and cells from these patients show chromosomal instability. Here, using an in vivo mouse model system with the pink-eyed unstable mutation, we demonstrate that the absence of functional Atm results in a significantly elevated frequency of intrachromosomal recombination resulting in deletion events (wild-type 17.73%, heterozygous Atm 15.72%, and mutant Atm 30.33%). No such increase was observed in mice heterozygous for Atm. These results further advocate the role of ATM in maintaining genomic integrity after the onset of endogenous damage. This system relies on the initiation of events during a relatively short time frame to produce an observable deletion product. AT patients have a lifelong exposure to endogenous damage and perhaps similarly acting external agents. Because 25% of our genome consists of repeated elements, genomic instability due to an increased level of homologous recombination between such repeats, as observed here, may contribute to carcinogenesis in AT patients.
Insights
Ataxia telangiectasia (AT) is linked to ATM gene mutations, causing DNA repair defects. Our mouse model shows complete Atm absence significantly increases genomic instability and recombination, potentially driving cancer in AT patients.
Area of Science:
- Genetics
- Molecular Biology
- Cancer Research
Background:
- Ataxia telangiectasia (AT) patients possess inactivating mutations in both copies of the ATM gene.
- The ATM protein is crucial for recognizing DNA double-strand breaks (DSBs), with its absence delaying and reducing the p53 response.
- AT patients exhibit a high cancer predisposition and chromosomal instability in their cells.
Purpose of the Study:
- To investigate the role of functional Atm in maintaining genomic integrity using an in vivo mouse model.
- To assess the frequency of intrachromosomal recombination and deletion events in the absence of Atm.
Main Methods:
- Utilized an in vivo mouse model with the pink-eyed unstable mutation.
- Compared the frequency of intrachromosomal recombination leading to deletion events in wild-type, heterozygous Atm, and mutant Atm mice.
Main Results:
- The absence of functional Atm significantly elevated the frequency of intrachromosomal recombination resulting in deletion events (30.33% in mutant Atm vs. 17.73% in wild-type).
- No significant increase in recombination frequency was observed in mice heterozygous for Atm (15.72%).
Conclusions:
- These findings underscore the critical role of ATM in preserving genomic integrity following endogenous DNA damage.
- Increased homologous recombination due to genomic instability in AT patients may contribute to carcinogenesis, especially given the prevalence of repetitive elements in the genome.
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