Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Experiment Videos

Expression profile viewer (ExProView): a software tool for transcriptome analysis.

M Larsson1, S Ståhl, M Uhlén

  • 1Department of Biotechnology, Royal Institute of Technology (KTH), Stockholm, S-100 44, Sweden. magnus@biochem.kth.se

Genomics
|March 8, 2000
PubMed
Summary
This summary is machine-generated.

Related Concept Videos

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

Identification of strategies to optimize pain management in people with dementia living in nursing homes using nominal group technique.

Geriatric nursing (New York, N.Y.)·2026
Same author

Evidence of orbital mixing upon ionization via Cooper minimum photoelectron dynamics in epichlorohydrin. Experiment and theory.

The Journal of chemical physics·2026
Same author

Data of the Insect Biome Atlas: a metabarcoding survey of the terrestrial arthropods of Sweden and Madagascar.

Scientific data·2025
Same author

Widespread slow growth of acquisitive tree species.

Nature·2025
Same author

Effects of adding early cooperation and a work-place dialogue meeting to primary care management for sick-listed patients with stress-related disorders: CO-WORK-CARE-Stress - a pragmatic cluster randomised controlled trial.

Scandinavian journal of primary health care·2024
Same author

Women's decision-making related to induced abortion - a cross sectional study during a period of Covid-19 pandemic, in Sweden.

The European journal of contraception & reproductive health care : the official journal of the European Society of Contraception·2022
Same journal

Integrating transcriptomics and metabolomics reveals the molecular landscape of sperm maturation driven by regional differentiation in the epididymis of Guizhou-Guiqian semi-fine wool sheep.

Genomics·2026
Same journal

Impact of genotype on histopathology and clinical characters in a Chinese cohort with obstructive hypertrophic cardiomyopathy.

Genomics·2026
Same journal

A novel reusable transcriptome-wide association study workflow used to map key genes linked to important cattle traits.

Genomics·2026
Same journal

The large mitochondrial genome of Syndiclis anlungensis (Lauraceae): Genome structure, comparative analysis, and phylogenetic relationships with other Syndiclis species.

Genomics·2026
Same journal

DeepGEP: Deep learning for gene expression prediction from multi-omics in mammals.

Genomics·2026
Same journal

Molecular features of external Auditory Canal cholesteatoma by microbial metagenomic sequencing.

Genomics·2026
See all related articles

Expression Profile Viewer (ExProView) is a new software tool for analyzing gene expression profiles from expressed sequence tags (ESTs) and SAGE data. It visualizes gene expression patterns using a novel "virtual chip" display for enhanced biological data exploration.

Area of Science:

  • Bioinformatics
  • Computational Biology
  • Genomics

Background:

  • Gene expression profiling is crucial for understanding cellular functions.
  • Analyzing large datasets from expressed sequence tags (ESTs) and Serial Analysis of Gene Expression (SAGE) presents computational challenges.

Purpose of the Study:

  • To introduce Expression Profile Viewer (ExProView), a software tool designed for the analysis and visualization of gene expression profiles.
  • To provide a user-friendly interface for exploring complex transcriptomic data.

Main Methods:

  • Development of ExProView software for processing EST and SAGE data.
  • Implementation of a "virtual chip" display for visualizing classified transcript data.
  • Integration of multiple gene/protein classification systems (cellular role, subcellular compartment, chromosome localization) for data projection.

Related Experiment Videos

Main Results:

  • ExProView successfully visualizes gene expression data in a flexible two-dimensional "virtual chip" format.
  • The software allows interactive exploration, providing access to detailed gene information and WWW links.
  • Public EST and SAGE data from the Cancer Genome Anatomy Project were effectively analyzed and visualized using ExProView.

Conclusions:

  • ExProView offers a powerful visualization tool for global mRNA expression analysis.
  • The software facilitates the exploration of functional expression patterns and individual gene details.
  • ExProView enhances the understanding of complex gene expression datasets through interactive visualization.