Purification and characterization of DnaC810, a primosomal protein capable of bypassing PriA function

L Xu1, K J Marians

  • 1Biochemistry and Structural Biology Graduate Program, Cornell University Graduate School of Medical Sciences, New York, New York 10021, USA.

Insights

Mutant DnaC810 protein bypasses the need for PriA in DNA repair and recombination by independently loading DnaB onto DNA. This restores function in Escherichia coli lacking PriA, aiding UV DNA repair and homologous recombination.

Area of Science:

  • Molecular Biology
  • DNA Replication and Repair
  • Bacteriology

Background:

  • PriA protein is essential for DNA repair and homologous recombination in Escherichia coli.
  • Loss of PriA function impairs replication fork assembly at recombination intermediates like D-loops.
  • Suppressor mutations in dnaC can restore function to priA null mutants.

Purpose of the Study:

  • To characterize the DnaC810 protein, a suppressor mutation of dnaC.
  • To elucidate the mechanism by which DnaC810 bypasses the requirement for PriA.
  • To understand the role of DnaC810 in replication fork assembly.

Main Methods:

  • Cloning and overexpression of the dnaC810 gene.
  • Purification and biochemical characterization of the DnaC810 protein.
  • In vitro assays for DNA synthesis and protein-DNA interactions (gel mobility shift).

Main Results:

  • DnaC810 protein supports PriA-independent synthesis of phiX174 complementary strand DNA.
  • DnaC810 catalyzes a single-stranded DNA-binding protein (SSB)-insensitive priming reaction with DnaB and DnaG.
  • DnaC810 directly loads DnaB onto SSB-coated single-stranded DNA and D-loop DNA.

Conclusions:

  • DnaC810 protein bypasses the requirement for PriA, PriB, PriC, and DnaT in replication fork assembly at recombination intermediates.
  • The unique priming activity of DnaC810 explains its ability to restore function in priA mutants.
  • This finding provides insights into alternative pathways for replication restart and DNA repair.

Related Concept Videos

piRNA - Piwi-interacting RNAs02:57

piRNA - Piwi-interacting RNAs

PIWI-interacting RNAs, or piRNAs, are the most abundant short non-coding RNAs. More than 20,000 genes have been found in humans that code for piRNAs while only 2000 genes have been found for miRNAs. piRNAs can act at the transcriptional and post-transcriptional levels and have a vital role in silencing transposable elements present in germ cells. They are also involved in epigenetic silencing and activation. Previously, they were thought to function only in germ cells but new evidence suggests...
Abnormal Proliferation02:23

Abnormal Proliferation

Under normal conditions, most adult cells remain in a non-proliferative state unless stimulated by internal or external factors to replace lost cells. Abnormal cell proliferation is a condition in which the cell's growth exceeds and is uncoordinated with normal cells. In such situations, cell division persists in the same excessive manner even after cessation of the stimuli, leading to persistent tumors. The tumor arises from the damaged cells that replicate to pass the damage to the daughter...
Nonsense-mediated mRNA Decay02:27

Nonsense-mediated mRNA Decay

The Upf proteins that carry out nonsense-mediated decay (NMD) are found in all eukaryotic organisms, including humans. Each protein has an individual role, but they need to work in collaboration. Upf1 is an ATP-dependent RNA helicase that unwinds the RNA helix. Because Upf1 can unwind any RNA, Upf2 and Upf3 are required to help Upf1 discriminate between nonsense and normal mRNAs.
Usually, Upf3 binds to an Exon Junction Complex (EJC) at mRNA splice sites. If a ribosome fully translates the mRNA,...
DNA Isolation01:58

DNA Isolation

DNA from cells is required for many biotechnology and research applications, such as molecular cloning. To remove and purify DNA from cells, researchers use various methods of DNA extraction. While the specifics of different protocols may vary, some general concepts underlie the process of DNA extraction.
DNA Isolation01:24

DNA Isolation

DNA isolation protocols can be fast and straightforward or complex and time-consuming depending on the type and quality of DNA required for further processing. For example, plasmid DNA extraction is a bit more complicated than genomic DNA extraction because of the need for an appropriate lysis method to separate plasmid DNA from gDNA during isolation. However, for specific applications, such as long-range DNA sequencing that require a good yield of high- quality DNA samples, we need to follow...
Restarting Stalled Replication Forks02:37

Restarting Stalled Replication Forks

DNA replication is initiated at sites containing predefined DNA sequences known as origins of replication. DNA is unwound at these sites by the minichromosome maintenance (MCM) helicase and other factors such as Cdc45 and the associated GINS complex.The unwound single strands are protected by replication protein A (RPA) until DNA polymerase starts synthesizing DNA at the 5’ end of the strand in the same direction as the replication fork. To prevent the replication fork from falling apart, a...