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Updated: Jul 16, 2026

Reverse Yeast Two-hybrid System to Identify Mammalian Nuclear Receptor Residues that Interact with Ligands and/or Antagonists
Published on: November 15, 2013
The orphan nuclear receptor Ear-2 is a negative coregulator for thyroid hormone nuclear receptor function
X G Zhu1, K S Park, M Kaneshige
1Laboratory of Molecular Biology, National Cancer Institute, National Institutes of Health, Bethesda, Maryland 20892, USA.
Abstract:
Thyroid hormone (T3) nuclear receptors (TR) are ligand-dependent transcription factors which regulate growth, differentiation, and development. One emerging hypothesis suggests that TR mediate these diverse effects via a large network of coregulators. Recently, we found that TR-mediated transcriptional responses varied in six cell lines derived from different tissues. We therefore used human TR subtype beta1 (TRbeta1) as bait to search for coregulators in human colon carcinoma RKO cells with a yeast two-hybrid system. RKO cells exhibited T3-dependent and -independent transcriptional activation. One of the three positive clones was identified as Ear-2, which is a distant member of the chick ovalbumin upstream promoter-transcription factors of the orphan nuclear receptor family. The physical interaction between Ear-2 and TRbeta1 was further confirmed by specific binding of Ear-2 to glutathione S-transferase-TRbeta1. In addition, Ear-2 was found to associate with TRbeta1 in cells. As a result of this physical interaction, binding of TRbeta1 to the T3 response elements was inhibited. Using reporter systems, we found that both the basal activation and the T3-dependent activation mediated by TRbeta1 were repressed by Ear-2 in CV1 cells. In RKO cells, however, the T3-independent transcriptional activity was more sensitive to the repression effect of Ear-2 than the T3-dependent transcriptional activity. The repression effect of Ear-2 was reversed by steroid hormone receptor coactivator 1. These results suggest that TR-mediated responses reflect a balance of corepressors and coactivators in cells. These findings further strengthen the hypothesis that the diverse activities of TR are achieved via a large network of coregulators that includes Ear-2.
Insights
Thyroid hormone receptors (TR) interact with coregulators like Ear-2, influencing gene transcription. Ear-2 represses TR activity, but this effect can be modulated by coactivators, highlighting the complex network controlling TR function.
Area of Science:
- Molecular Biology
- Endocrinology
- Genetics
Background:
- Thyroid hormone receptors (TR) are crucial ligand-dependent transcription factors regulating vital cellular processes.
- TR's diverse effects are hypothesized to be mediated by a complex network of coregulators.
- TR-mediated transcriptional responses exhibit cell-type-specific variations.
Purpose of the Study:
- To identify novel coregulators of human TR subtype beta1 (TRbeta1) using a yeast two-hybrid system.
- To investigate the functional interaction between TRbeta1 and identified coregulators.
- To elucidate the role of coregulators in TR-mediated transcriptional regulation.
Main Methods:
- Yeast two-hybrid screening using TRbeta1 as bait in RKO colon carcinoma cells.
- Co-immunoprecipitation assays to confirm physical interactions between TRbeta1 and Ear-2.
- Reporter gene assays to assess the impact of Ear-2 on TRbeta1-mediated transcription.
Main Results:
- Ear-2, a member of the orphan nuclear receptor family, was identified as a TRbeta1-interacting protein.
- Physical interaction between Ear-2 and TRbeta1 was confirmed in vitro and in cells.
- Ear-2 inhibited TRbeta1 binding to T3 response elements and repressed both basal and T3-dependent TRbeta1 transcriptional activity.
- Ear-2's repressive effect was cell-type-dependent and reversible by coactivators.
Conclusions:
- Ear-2 acts as a TRbeta1 corepressor, modulating TR-mediated gene expression.
- TR-mediated responses are regulated by a balance between corepressors and coactivators.
- These findings support the hypothesis that TR's diverse functions are orchestrated by an extensive coregulator network, including Ear-2.
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