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Published on: November 22, 2024
PfPK6, a novel cyclin-dependent kinase/mitogen-activated protein kinase-related protein kinase from Plasmodium
V Bracchi-Ricard1, S Barik, C Delvecchio
1Department of Molecular Biology and Microbiology, University of Central Florida, Orlando, FL 32816, USA.
Abstract:
We have isolated a novel protein kinase cDNA, PfPK6, by differential display RT-PCR (DDRT-PCR) of mRNA obtained from different asexual erythrocytic stages of Plasmodium falciparum, which shows sequence similarity to both cyclin-dependent kinase (CDK) and mitogen-activated protein kinase (MAPK) family members. The 915 bp open reading frame (ORF) is interrupted by seven introns and encodes a 305-residue polypeptide with a predicted molecular mass of 35848 Da. Several cDNA clones with some of the intron sequences were isolated, indicating alternate or defective splicing of PfPK6 transcripts because the gene seems to be a single copy located on chromosome 13. The similarity of the catalytic domain of PfPK6 to those of CDK2 and MAPK is 57.3% and 49.6%, respectively. The signature PSTAIRE (single-letter amino acid codes) CDK motif is changed to SKCILRE in PfPK6. The TXY residues that are phosphorylated in MAPKs for their activation are T(173)PT in PfPK6. Three size classes of PfPK6 transcripts of 6.5, 2.0 and 1.1 kb are up-regulated during the transition of P. falciparum from ring to trophozoite. Western blot analysis suggested the expression of a 35 kDa polypeptide in trophozoites and schizonts. Immunofluorescence studies indicated both nuclear and cytoplasmic localization of PfPK6 in trophozoite, schizont and segmenter stages. In vitro, recombinant PfPK6 phosphorylated itself and also exogenous substrates, histone and the small subunit of the malarial ribonucleotide reductase (R2). The kinase activity of PfPK6 is sensitive to CDK inhibitors such as olomoucine and roscovitine. PfPK6 showed a preference for Mn(2+) over Mg(2+) ions as a cofactor. The Lys(38)-->Arg mutant is severely defective in its interaction with ATP and bivalent cations and somewhat defective in catalytic rate for R2 phosphorylation.
Insights
We discovered a new protein kinase, PfPK6, in Plasmodium falciparum, crucial for parasite development. This kinase, similar to CDK and MAPK families, shows activity and is targeted by inhibitors, offering potential therapeutic avenues.
Area of Science:
- Molecular Parasitology
- Protein Kinase Research
- Malaria Drug Discovery
Background:
- Plasmodium falciparum asexual erythrocytic stages rely on precise cell cycle regulation.
- Protein kinases play critical roles in cell signaling and developmental transitions.
- Identifying novel kinases in malaria parasites can reveal new therapeutic targets.
Purpose of the Study:
- To isolate and characterize a novel protein kinase from Plasmodium falciparum.
- To investigate the structural and functional properties of the identified kinase, PfPK6.
- To explore the potential of PfPK6 as a drug target against malaria.
Main Methods:
- Differential display RT-PCR (DDRT-PCR) for novel gene discovery.
- Sequence analysis to determine homology to known kinase families (CDK, MAPK).
- Western blot, immunofluorescence, and in vitro kinase assays for protein expression, localization, and activity.
Main Results:
- A novel protein kinase cDNA, PfPK6, was isolated and characterized.
- PfPK6 exhibits sequence similarity to both cyclin-dependent kinase (CDK) and mitogen-activated protein kinase (MAPK) families.
- PfPK6 transcripts are upregulated during parasite development, and the protein is active, self-phosphorylating and phosphorylating substrates like histone and R2.
- Kinase activity is sensitive to CDK inhibitors and prefers Mn2+ over Mg2+.
Conclusions:
- PfPK6 is a novel protein kinase in Plasmodium falciparum with unique features, distinct from canonical CDKs and MAPKs.
- Its expression and activity correlate with parasite developmental stages, suggesting a role in asexual erythrocytic development.
- PfPK6 represents a potential new target for antimalarial drug development due to its sensitivity to CDK inhibitors.
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