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Updated: Aug 15, 2026

High-resolution Imaging and Analysis of Individual Astral Microtubule Dynamics in Budding Yeast
Published on: April 20, 2017
Structure-function relationships in yeast tubulins
K L Richards1, K R Anders, E Nogales
1Department of Genetics, Stanford University School of Medicine, Stanford, California 94305, USA.
Abstract:
A comprehensive set of clustered charged-to-alanine mutations was generated that systematically alter TUB1, the major alpha-tubulin gene of Saccharomyces cerevisiae. A variety of phenotypes were observed, including supersensitivity and resistance to the microtubule-destabilizing drug benomyl, lethality, and cold- and temperature-sensitive lethality. Many of the most benomyl-sensitive tub1 alleles were synthetically lethal in combination with tub3Delta, supporting the idea that benomyl supersensitivity is a rough measure of microtubule instability and/or insufficiency in the amount of alpha-tubulin. The systematic tub1 mutations were placed, along with the comparable set of tub2 mutations previously described, onto a model of the yeast alpha-beta-tubulin dimer based on the three-dimensional structure of bovine tubulin. The modeling revealed a potential site for binding of benomyl in the core of beta-tubulin. Residues whose mutation causes cold sensitivity were concentrated at the lateral and longitudinal interfaces between adjacent subunits. Residues that affect binding of the microtubule-binding protein Bim1p form a large patch across the exterior-facing surface of alpha-tubulin in the model. Finally, the positions of the mutations suggest that proximity to the alpha-beta interface may account for the finding of synthetic lethality of five viable tub1 alleles with the benomyl-resistant but otherwise entirely viable tub2-201 allele.
Insights
Systematic mutations in the yeast alpha-tubulin gene (TUB1) reveal key insights into microtubule stability and drug interactions. These findings help understand benomyl sensitivity and potential drug binding sites.
Area of Science:
- Molecular Biology
- Cell Biology
- Biochemistry
Background:
- Tubulin is a critical protein for microtubule formation, essential for cell structure and division.
- Alpha-tubulin (encoded by TUB1 in yeast) is a major component of microtubules, and its function is vital for cellular processes.
- Understanding tubulin mutations is key to deciphering microtubule dynamics and drug responses.
Purpose of the Study:
- To systematically investigate the effects of charged-to-alanine mutations in the yeast TUB1 gene.
- To correlate specific TUB1 mutations with observed phenotypes, including drug sensitivity and temperature sensitivity.
- To model the yeast alpha-beta-tubulin dimer and map mutation sites in relation to drug binding and protein interactions.
Main Methods:
- Generation of clustered charged-to-alanine mutations in the TUB1 gene of Saccharomyces cerevisiae.
- Phenotypic analysis of mutant strains, including benomyl sensitivity/resistance, lethality, and temperature sensitivity.
- Structural modeling of the yeast alpha-beta-tubulin dimer using bovine tubulin structures and mapping of mutation sites.
Main Results:
- Observed phenotypes ranged from drug supersensitivity and resistance to lethality and temperature sensitivity.
- Benomyl supersensitivity correlated with microtubule instability and was exacerbated by TUB3 deletion.
- Modeling suggested a potential benomyl binding site in beta-tubulin and identified mutation clusters at subunit interfaces and Bim1p binding sites.
Conclusions:
- Benomyl supersensitivity serves as an indicator of microtubule instability.
- Mutations affecting microtubule stability are often located at subunit interfaces.
- Proximity to the alpha-beta interface influences synthetic lethality interactions between tubulin alleles.
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