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Updated: Aug 19, 2026

Identification of Kinase-substrate Pairs Using High Throughput Screening
Published on: August 29, 2015
Substrate recognition domains within extracellular signal-regulated kinase mediate binding and catalytic activation
A Nichols1, M Camps, C Gillieron
1Serono Pharmaceutical Research Institute, Ares-Serono International SA, Plan-les-Ouates 1228, Geneva, Switzerland.
Abstract:
Mitogen-activated protein (MAP) kinase phosphatase-3 (MKP-3) is a dual specificity phosphatase that inactivates extracellular signal-regulated kinase (ERK) MAP kinases. This reflects tight and specific binding between ERK and the MKP-3 amino terminus with consequent phosphatase activation and dephosphorylation of the bound MAP kinase. We have used a series of p38/ERK chimeric molecules to identify domains within ERK necessary for binding and catalytic activation of MKP-3. These studies demonstrate that ERK kinase subdomains V-XI are necessary and sufficient for binding and catalytic activation of MKP-3. These domains constitute the major COOH-terminal structural lobe of ERK. p38/ERK chimeras possessing these regions display increased sensitivity to inactivation by MKP-3. These data also reveal an overlap between ERK domains interacting with MKP-3 and those known to confer substrate specificity on the ERK MAP kinase. Consistent with this, we show that peptides representing docking sites within the target substrates Elk-1 and p90(rsk) inhibit ERK-dependent activation of MKP-3. In addition, abolition of ERK-dependent phosphatase activation following mutation of a putative kinase interaction motif (KIM) within the MKP-3 NH(2) terminus suggests that key sites of contact for the ERK COOH-terminal structural lobe include residues localized between the Cdc25 homology domains (CH2) found conserved between members of the DSP gene family.
Insights
Mitogen-activated protein kinase phosphatase-3 (MKP-3) inactivates extracellular signal-regulated kinase (ERK) through specific binding. The COOH-terminal lobe of ERK, comprising subdomains V-XI, is crucial for this interaction and phosphatase activation.
Area of Science:
- Molecular Biology
- Enzymology
- Signal Transduction
Background:
- Mitogen-activated protein kinase phosphatase-3 (MKP-3) is a key enzyme regulating extracellular signal-regulated kinase (ERK) activity.
- MKP-3 deactivates ERK through specific binding and subsequent dephosphorylation.
Purpose of the Study:
- To identify the specific domains within ERK essential for binding and catalytic activation by MKP-3.
- To elucidate the structural basis of the interaction between ERK and MKP-3.
Main Methods:
- Utilized p38/ERK chimeric molecules to map functional domains.
- Investigated the role of specific ERK subdomains (V-XI) in MKP-3 interaction.
- Analyzed the effect of substrate-mimicking peptides and MKP-3 mutations on phosphatase activation.
Main Results:
- ERK kinase subdomains V-XI were identified as necessary and sufficient for MKP-3 binding and activation.
- These domains form the major COOH-terminal structural lobe of ERK.
- Chimeric ERK molecules containing these domains showed enhanced sensitivity to MKP-3 inactivation.
- Overlap was observed between ERK domains interacting with MKP-3 and those conferring substrate specificity.
- Peptides from target substrates (Elk-1, p90rsk) and mutations in MKP-3's kinase interaction motif (KIM) inhibited ERK-dependent activation.
Conclusions:
- The COOH-terminal structural lobe of ERK (subdomains V-XI) is critical for specific recognition and activation of MKP-3.
- The interaction interface for MKP-3 involves residues within ERK's COOH-terminal lobe and potentially MKP-3's NH2-terminal KIM.
- Understanding these interactions provides insights into MAP kinase regulation and substrate specificity.
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