Xeroderma pigmentosum complementation group A protein acts as a processivity factor

M W Lambert1, L Yang

  • 1Department of Pathology, Laboratory Medicine, UMDNJ-New Jersey Medical School, 185 South Orange Avenue, Newark, New Jersey 07103, USA. mlambert@umdnj.edu

Insights

The xeroderma pigmentosum complementation group A (XPA) protein corrects DNA repair defects by enabling endonucleases to locate DNA damage more effectively. This suggests XPA protein acts as a processivity factor in DNA repair.

Area of Science:

  • Molecular Biology
  • DNA Repair Mechanisms
  • Biochemistry

Background:

  • Endonucleases in normal cells locate DNA damage via a processive mechanism.
  • In xeroderma pigmentosum complementation group A (XPA) cells, this process is distributive or less processive.
  • The XPA protein is known to cause the DNA repair defect in XPA cells.

Purpose of the Study:

  • To investigate the role of the XPA protein in the target site location mechanism of endonucleases.
  • To determine if XPA protein influences the processivity of endonuclease action on damaged DNA.

Main Methods:

  • Produced and purified recombinant XPA protein from E. coli.
  • Assayed the mechanism of action of XPA endonucleases on UVC-irradiated DNA.
  • Compared endonuclease activity in the presence and absence of recombinant XPA protein.

Main Results:

  • Recombinant XPA protein restored the processive mechanism of action for XPA endonucleases on damaged DNA.
  • The defect in processive DNA damage site location in XPA cells was corrected by the recombinant XPA protein.

Conclusions:

  • The XPA protein functions as a processivity factor for endonucleases involved in DNA repair.
  • Beyond damage recognition/verification, XPA protein plays a role in ensuring efficient DNA repair site location.

Related Concept Videos

Protein Complexes with Interchangeable Parts01:57

Protein Complexes with Interchangeable Parts

Groups of proteins may form a complex where each protein in this complex has a different role in the overall execution of the complex’s function. Often some of the proteins in the complex can be replaced by a closely related variant to give a complex that contains many of the same components yet is functionally distinct.
The SCF ubiquitin ligase is a protein complex of five individual proteins. This complex attaches ubiquitin to other target proteins to mark them for degradation. In order to...
RNA Polymerase II Accessory Proteins02:36

RNA Polymerase II Accessory Proteins

Proteins that regulate transcription can do so either via direct contact with RNA Polymerase or through indirect interactions facilitated by adaptors, mediators, histone-modifying proteins, and nucleosome remodelers. Direct interactions to activate transcription is seen in bacteria as well as in some eukaryotic genes. In these cases, upstream activation sequences are adjacent to the promoters, and the activator proteins interact directly with the transcriptional machinery. For example, in...
RNA Polymerase II Accessory Proteins02:36

RNA Polymerase II Accessory Proteins

Proteins that regulate transcription can do so either via direct contact with RNA Polymerase or through indirect interactions facilitated by adaptors, mediators, histone-modifying proteins, and nucleosome remodelers. Direct interactions to activate transcription is seen in bacteria as well as in some eukaryotic genes. In these cases, upstream activation sequences are adjacent to the promoters, and the activator proteins interact directly with the transcriptional machinery. For example, in...
Protein Complex Assembly02:41

Protein Complex Assembly

Proteins can form homomeric complexes with another unit of the same protein or heteromeric complexes with different types.  Most protein complexes self-assemble spontaneously via ordered pathways, while some proteins need assembly factors that guide their proper assembly. Despite the crowded intracellular environment, proteins usually interact with their correct partners and form functional complexes.
Many viruses self-assemble into a fully functional unit using the infected host cell to...
Protein Complex Assembly02:41

Protein Complex Assembly

Proteins can form homomeric complexes with another unit of the same protein or heteromeric complexes with different types.  Most protein complexes self-assemble spontaneously via ordered pathways, while some proteins need assembly factors that guide their proper assembly. Despite the crowded intracellular environment, proteins usually interact with their correct partners and form functional complexes.
Many viruses self-assemble into a fully functional unit using the infected host cell to...
Mismatch Repair01:48

Mismatch Repair

Organisms are capable of detecting and fixing nucleotide mismatches that occur during DNA replication. This sophisticated process requires identifying the new strand and replacing the erroneous bases with correct nucleotides. Mismatch repair is coordinated by many proteins in both prokaryotes and eukaryotes.The Mutator Protein Family Plays a Key Role in DNA Mismatch RepairThe human genome has more than 3 billion base pairs of DNA per cell. Prior to cell division, that vast amount of genetic...