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Updated: Aug 15, 2026

High-throughput Purification of Affinity-tagged Recombinant Proteins
Published on: August 26, 2012
The FBP interacting repressor targets TFIIH to inhibit activated transcription
1Gene Regulation Section, Laboratory of Pathology, National Cancer Institute, Bethesda, Maryland 20892, USA.
Abstract:
FUSE-binding protein (FBP) binds the single-stranded far upstream element of active c-myc genes, possesses potent transcription activation and repression domains, and is necessary for c-myc expression. A novel 60 kDa protein, the FBP interacting repressor (FIR), blocked activator-dependent, but not basal, transcription through TFIIH. Recruited through FBP's nucleic acid-binding domain, FIR formed a ternary complex with FBP and FUSE. FIR repressed a c-myc reporter via the FUSE. The amino terminus of FIR contained an activator-selective repression domain capable of acting in cis or even in trans in vivo and in vitro. The repression domain of FIR targeted only TFIIH's p89/XPB helicase, required at several stages in transcription, but not factors required for promoter selection. Thus, FIR locks TFIIH in an activation-resistant configuration that still supports basal transcription.
Insights
A novel FBP interacting repressor (FIR) protein binds FUSE-binding protein (FBP) and blocks c-myc transcription. FIR selectively inhibits TFIIH
Area of Science:
- Molecular Biology
- Gene Regulation
- Transcription Factors
Background:
- FUSE-binding protein (FBP) is crucial for c-myc gene expression.
- FBP binds the far upstream element (FUSE) of active c-myc genes.
- FBP possesses both transcription activation and repression capabilities.
Purpose of the Study:
- To identify novel proteins interacting with FBP.
- To investigate the role of FBP-interacting proteins in c-myc transcription regulation.
- To elucidate the mechanism by which FBP interacting repressor (FIR) modulates transcription.
Main Methods:
- Co-immunoprecipitation to identify interacting proteins.
- Reporter gene assays to measure c-myc promoter activity.
- In vitro transcription assays using purified transcription factors.
- Site-directed mutagenesis to map functional domains.
Main Results:
- A novel 60 kDa protein, FBP interacting repressor (FIR), was identified.
- FIR binds to FBP via its nucleic acid-binding domain, forming a ternary complex with FUSE.
- FIR represses activator-dependent, but not basal, transcription through TFIIH.
- The N-terminus of FIR contains an activator-selective repression domain that targets TFIIH's p89/XPB helicase.
Conclusions:
- FIR acts as a repressor of c-myc transcription by interfering with TFIIH.
- FIR locks TFIIH in an activation-resistant state while allowing basal transcription.
- FIR provides a novel mechanism for regulating gene expression through targeted inhibition of transcription machinery.
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