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Updated: Jul 27, 2026

A Practical Guide to Phylogenetics for Nonexperts
Published on: February 5, 2014
Interpreting the universal phylogenetic tree
1Department of Microbiology, University of Illinois at Urbana-Champaign, B103 Chemical and Life Sciences Laboratory, MC-110, 601 South Goodwin Avenue, Urbana, IL 61801-3709, USA. carl@ninja.life.uiuc.edu
Abstract:
The universal phylogenetic tree not only spans all extant life, but its root and earliest branchings represent stages in the evolutionary process before modern cell types had come into being. The evolution of the cell is an interplay between vertically derived and horizontally acquired variation. Primitive cellular entities were necessarily simpler and more modular in design than are modern cells. Consequently, horizontal gene transfer early on was pervasive, dominating the evolutionary dynamic. The root of the universal phylogenetic tree represents the first stage in cellular evolution when the evolving cell became sufficiently integrated and stable to the erosive effects of horizontal gene transfer that true organismal lineages could exist.
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