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Updated: Aug 2, 2026

A Protocol for Computer-Based Protein Structure and Function Prediction
Published on: November 3, 2011
Structural symmetry and protein function.
1Department of Molecular Biology, Scripps Research Institute, La Jolla, California 92037, USA. goodsell@scripps.edu, olson@scripps.edu
Protein evolution favors symmetrical structures for stability and efficient assembly. While symmetry is common, various forms of asymmetry exist, driven by specific cellular functions and interactions.
Area of Science:
- Biochemistry
- Structural Biology
- Evolutionary Biology
Background:
- Most cellular proteins exist as symmetrical oligomeric complexes.
- Oligomerization offers advantages in protein stability, function, and genetic efficiency.
- Symmetry is a prevalent feature in protein complex evolution.
Purpose of the Study:
- To explore the evolutionary drivers and diverse forms of symmetry in protein complexes.
- To understand how functional, genetic, and physicochemical factors influence protein quaternary structure.
- To investigate the prevalence and mechanisms of asymmetry in protein assemblies.
Main Methods:
- Analysis of protein structures and evolutionary principles.
- Review of literature on protein complex formation and symmetry.
- Examination of various symmetry types and their functional implications.
Main Results:
- Symmetrical oligomers are selected for morphological and cooperative functions, enhanced stability, and efficient synthesis.
- Functional constraints like DNA/membrane interactions or directional motion can limit or break symmetry.
- Various forms of asymmetry, including local, reciprocating, and global, are observed, with dimers often favored evolutionarily.
Conclusions:
- Protein complex evolution balances the benefits of symmetry with functional demands, leading to diverse structural solutions.
- While symmetry offers advantages, evolutionary pressures can lead to various forms of asymmetry to meet specific cellular needs.
- All crystallographic point groups are represented in protein structures, highlighting the adaptability of symmetry in evolution.
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