Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Experiment Videos

DaliLite workbench for protein structure comparison.

L Holm1, J Park

  • 1holm@embl-ebi.ac.uk

Bioinformatics (Oxford, England)
|September 12, 2000
PubMed
Summary
This summary is machine-generated.

Related Concept Videos

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

ZnO nanowire UV photodetectors with high internal gain.

Nano letters·2007
Same author

Measurement of direct photon production in p+p collisions at sqrt[s] = 200 GeV.

Physical review letters·2007
Same author

The effect on bone regeneration of a liposomal vector to deliver BMP-2 gene to bone grafts in peri-implant bone defects.

Biomaterials·2007
Same author

Measurement of high-pT single electrons from heavy-flavor decays in p + p collisions at square root of s = 200 GeV.

Physical review letters·2007
Same author

Blood pressure measurement using finger cuff.

Conference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual Conference·2007
Same author

Automated Individual Prescription of Exercise with an XML-based Expert System.

Conference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual Conference·2007
Same journal

conMItion: an R package adjusting confounding factors for associations in multi-omics.

Bioinformatics (Oxford, England)·2026
Same journal

SpaMFG: a Spatial Multi-omics Integration Method based on Feature Grouping.

Bioinformatics (Oxford, England)·2026
Same journal

CSCN: Inference of Cell-Specific Causal Networks Using Single-Cell RNA-Seq Data.

Bioinformatics (Oxford, England)·2026
Same journal

Sparse CCA-Based Mediation Analysis with High-Dimensional Exposures and Mediators.

Bioinformatics (Oxford, England)·2026
Same journal

Enhancing Cross-Context Generalization in Drug Perturbation Prediction with a Multimodal Conditional Diffusion Framework.

Bioinformatics (Oxford, England)·2026
Same journal

Primer Design through Submodular Function Estimation.

Bioinformatics (Oxford, England)·2026
See all related articles

DaliLite offers standalone structural bioinformatics tools for comparing protein structures and searching databases. This program provides a web interface for visualizing alignments and 3D superimpositions.

Area of Science:

  • Structural Bioinformatics
  • Computational Biology
  • Biochemistry

Background:

  • Protein structure comparison is crucial for understanding function and evolution.
  • Efficient database searching tools are needed for large structural datasets.

Purpose of the Study:

  • To introduce DaliLite, a standalone program for pairwise structure comparison.
  • To enable structure database searching using the Dali search engine.
  • To provide a web interface for visualizing structural analysis results.

Main Methods:

  • Development of DaliLite as a standalone application.
  • Implementation of pairwise structure comparison algorithms.
  • Integration of a structure database search engine.
  • Creation of a web interface for results visualization.

Related Experiment Videos

Main Results:

  • DaliLite provides robust pairwise protein structure comparison.
  • The program facilitates efficient searching of structural databases.
  • A user-friendly web interface allows for viewing multiple alignments and 3D superimpositions.

Conclusions:

  • DaliLite is a valuable standalone tool for structural bioinformatics.
  • It enhances accessibility to the Dali server's search capabilities.
  • The integrated web interface aids in the interpretation of structural comparison results.