Proliferating cell nuclear antigen and Msh2p-Msh6p interact to form an active mispair recognition complex
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Updated: Oct 10, 2026

Resolving Affinity Purified Protein Complexes by Blue Native PAGE and Protein Correlation Profiling
Published on: April 1, 2017
H Flores-Rozas1, D Clark, R D Kolodner
1Ludwig Institute for Cancer Research, University of California-San Diego School of Medicine, La Jolla, California, USA.
Abstract:
Proliferating cell nuclear antigen (PCNA) is required for mismatch repair (MMR) and has been shown to interact with complexes containing Msh2p or MLH1 (refs 1-4). PCNA has been implicated to act in MMR before and during the DNA synthesis step, although the biochemical basis for the role of PCNA early in MMR is unclear. Here we observe an interaction between PCNA and Msh2p-Msh6p mediated by a specific PCNA-binding site present in Msh6p. An msh6 mutation that eliminated the PCNA-binding site caused a mutator phenotype and a defect in the interaction with PCNA. The association of PCNA with Msh2p-Msh6p stimulated the preferential binding of Msh2p-Msh6p to DNA containing mispaired bases. Mutant PCNA proteins encoded by MMR-defective pol30 alleles were defective for interaction with Msh2p-Msh6p and for stimulation of mispair binding by Msh2p-Msh6p. Our results suggest that PCNA functions directly in mispair recognition and that mispair recognition requires a higher-order complex containing proteins in addition to Msh2p-Msh6p.
Insights
Proliferating cell nuclear antigen (PCNA) interacts with Msh2p-Msh6p, aiding DNA mismatch repair (MMR). This interaction is crucial for recognizing DNA base mispairs, suggesting PCNA
Area of Science:
- Molecular biology
- Genetics
- Biochemistry
Background:
- Proliferating cell nuclear antigen (PCNA) is essential for DNA mismatch repair (MMR).
- The precise role of PCNA in the early stages of MMR remains biochemically undefined.
- PCNA is known to interact with key MMR proteins like Msh2p and MLH1.
Purpose of the Study:
- To elucidate the biochemical mechanism of PCNA's involvement in DNA mismatch repair.
- To investigate the interaction between PCNA and the Msh2p-Msh6p complex.
- To determine if PCNA directly participates in DNA mispair recognition.
Main Methods:
- Investigated the interaction between PCNA and Msh2p-Msh6p using specific binding sites.
- Utilized mutations in Msh6p to disrupt the PCNA-binding site and observed the phenotypic consequences.
- Employed mutant PCNA proteins (pol30 alleles) defective in MMR to assess their interaction with Msh2p-Msh6p and impact on mispair binding.
Main Results:
- Identified a specific PCNA-binding site in Msh6p that mediates the interaction with PCNA.
- A mutation eliminating this binding site in Msh6p resulted in a mutator phenotype and impaired PCNA interaction.
- PCNA association with Msh2p-Msh6p enhanced the binding of this complex to mismatched DNA.
- MMR-defective mutant PCNA proteins failed to interact with Msh2p-Msh6p and did not stimulate mispair binding.
Conclusions:
- PCNA directly functions in the recognition of DNA base mispairs during MMR.
- The interaction between PCNA and Msh2p-Msh6p is critical for efficient mispair recognition.
- Mispair recognition likely involves a higher-order complex including Msh2p-Msh6p and PCNA.
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