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Updated: Oct 10, 2026

Bacterial Expression and Purification of Human Matrix Metalloproteinase-3 using Affinity Chromatography
Published on: March 30, 2022
Characterization of a rainbow trout matrix metalloproteinase capable of degrading type I collagen
1Laboratory of Food Science, Kagawa Nutrition University, Komagome, Toshima, Tokyo, Japan. msaito@eiyo.ac.jp
Abstract:
Matrix metalloproteinases (MMPs) are widely distributed in vertebrate tissues and form a large family consisting of at least four distinct subfamilies. Higher vertebrate MMP-13 is well-known as collagenase-3, which represents the third member of a collagenase subfamily. In this study, we cloned cDNA coding for a unique fish homologue of human MMP-13 from a rainbow trout fibroblast cDNA library. The cDNA was 2.1 kb long and contained an open reading frame encoding a protein of 475 amino acids. The catalytic domain of the protein was 66% identical to the human counterpart with the greatest degree of identity occurring in the zinc binding site. In addition, it possessed three amino-acid residues (Tyr122, Asp233 and Gly235) characteristic of the collagenase subfamily, together with a six residue insertion which did not occur in the collagenase subfamily. Then the isolated cDNA was expressed in Escherichia coli and the recombinant protein was found to degrade gelatin and skin type I collagen. It is worth noting that rainbow trout type I collagen was more susceptible to proteolysis with the recombinant protein when compared with the calf one. It appeared that the recombinant protein also cleaved the nonhelical regions of rainbow trout muscle type V collagen. These results have revealed that the cDNA encodes a unique MMP-13 of rainbow trout. This is the first report of cDNA coding for fish MMP capable of degrading type I collagen.
Insights
Researchers identified a unique fish matrix metalloproteinase-13 (MMP-13) in rainbow trout. This fish MMP-13 effectively degrades type I collagen, marking a significant discovery in fish collagenase research.
Area of Science:
- Biochemistry
- Molecular Biology
- Fish Biology
Background:
- Matrix metalloproteinases (MMPs) are a large family of enzymes found in vertebrates.
- MMP-13, also known as collagenase-3, is a key collagenase in higher vertebrates.
- Understanding fish MMPs is crucial for comparative molecular biology.
Purpose of the Study:
- To clone and characterize a fish homologue of human MMP-13.
- To investigate the enzymatic activity of the identified fish MMP-13.
- To establish the first report of a fish MMP capable of degrading type I collagen.
Main Methods:
- Cloning of cDNA encoding rainbow trout MMP-13 from a fibroblast cDNA library.
- Expression of the recombinant protein in Escherichia coli.
- Degradation assays using gelatin, calf type I collagen, and rainbow trout type I and V collagen.
Main Results:
- A unique rainbow trout MMP-13 cDNA (2.1 kb) encoding a 475-amino acid protein was isolated.
- The recombinant fish MMP-13 showed 66% identity to human MMP-13 in the catalytic domain.
- The enzyme degraded gelatin and type I collagen, with higher susceptibility observed for rainbow trout collagen.
- Cleavage of nonhelical regions in rainbow trout muscle type V collagen was also observed.
Conclusions:
- The cloned cDNA encodes a unique rainbow trout MMP-13.
- This fish MMP-13 exhibits collagenase activity, particularly against its native type I collagen.
- This study represents the first identification of a fish MMP with type I collagen degrading capabilities.
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