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Assessment of Resistance to Tyrosine Kinase Inhibitors by an Interrogation of Signal Transduction Pathways by Antibody Arrays
Published on: September 19, 2018
The protein tyrosine kinase family of the human genome
D R Robinson1, Y M Wu, S F Lin
1Department of Biological Chemistry, UC Davis School of Medicine, UC Davis Cancer Center, Sacramento, California, CA 95817, USA.
Abstract:
As the sequencing of the human genome is completed by the Human Genome Project, the analysis of this rich source of information will illuminate many areas in medicine and biology. The protein tyrosine kinases are a large multigene family with particular relevance to many human diseases, including cancer. A search of the human genome for tyrosine kinase coding elements identified several novel genes and enabled the creation of a nonredundant catalog of tyrosine kinase genes. Ninety unique kinase genes can be identified in the human genome, along with five pseudogenes. Of the 90 tyrosine kinases, 58 are receptor type, distributed into 20 subfamilies. The 32 nonreceptor tyrosine kinases can be placed in 10 subfamilies. Additionally, mouse orthologs can be identified for nearly all the human tyrosine kinases. The completion of the human tyrosine kinase family tree provides a framework for further advances in biomedical science.
Insights
Researchers cataloged human tyrosine kinase genes, identifying 90 unique genes and their mouse counterparts. This comprehensive analysis provides a foundational framework for understanding these critical proteins in human health and disease, particularly cancer.
Area of Science:
- Genomics
- Molecular Biology
- Biochemistry
Background:
- The Human Genome Project has provided a vast dataset for biological and medical research.
- Protein tyrosine kinases (PTKs) are a significant multigene family implicated in various human diseases, notably cancer.
Purpose of the Study:
- To identify and catalog all human tyrosine kinase coding elements within the completed human genome.
- To establish a comprehensive and nonredundant inventory of the human tyrosine kinase gene family.
Main Methods:
- Bioinformatic analysis of the human genome sequence.
- Identification and classification of tyrosine kinase genes and pseudogenes.
- Comparative analysis to identify mouse orthologs.
Main Results:
- A catalog of 90 unique human tyrosine kinase genes and 5 pseudogenes was created.
- The 90 tyrosine kinases were classified into 58 receptor-type (20 subfamilies) and 32 nonreceptor-type (10 subfamilies).
- Orthologous genes in mice were identified for most human tyrosine kinases.
Conclusions:
- The completed human tyrosine kinase family tree offers a crucial framework for future biomedical research.
- This catalog facilitates deeper understanding of tyrosine kinase roles in human diseases like cancer.
- The findings pave the way for targeted therapeutic strategies and further biological discoveries.
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