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Artemis: sequence visualization and annotation.

K Rutherford1, J Parkhill, J Crook

  • 1The Sanger Centre, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SA, UK. kmr@sanger.ac.uk

Bioinformatics (Oxford, England)
|December 20, 2000
PubMed
Summary
This summary is machine-generated.

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Artemis is a DNA sequence visualization and annotation tool designed for analyzing compact genomes. This Java-based software supports sequences of all sizes and various analysis results, enhancing genomic research.

Area of Science:

  • Genomics
  • Bioinformatics
  • Computational Biology

Background:

  • Analyzing compact genomes of bacteria, archaea, and lower eukaryotes presents unique challenges.
  • Visualizing DNA sequences and their annotations is crucial for understanding genomic information.

Purpose of the Study:

  • To introduce Artemis, a versatile DNA sequence visualization and annotation tool.
  • To provide a platform for viewing analysis results within the context of DNA sequences and their translations.

Main Methods:

  • Artemis is implemented in Java, ensuring cross-platform compatibility.
  • The tool directly reads and writes sequences and annotations in standard formats like EMBL, GenBank, and GFF.
  • It visualizes sequence data alongside analysis outcomes and six-frame translations.

Related Experiment Videos

Main Results:

  • Artemis effectively displays DNA sequence data and associated analysis results.
  • The software handles sequences of varying sizes, from small genes to entire genomes.
  • It facilitates the analysis of compact genomes, common in bacteria, archaea, and lower eukaryotes.

Conclusions:

  • Artemis is a powerful and flexible tool for DNA sequence visualization and annotation.
  • Its ability to integrate diverse analysis results makes it valuable for genomic research.
  • The software is freely available under the GNU General Public License.