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PlantsP: a functional genomics database for plant phosphorylation.

M Gribskov1, F Fana, J Harper

  • 1San Diego Supercomputer Center and Department of Biology, University of California, San Diego, 9500 Gilman Drive, La Jolla, CA 92093, USA. gribskov@sdsc.edu

Nucleic Acids Research
|January 11, 2000
PubMed
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PlantsP is a new database for plant protein kinases and phosphatases. It integrates sequence data with functional genomics, including T-DNA insertion mutants in Arabidopsis thaliana.

Area of Science:

  • Plant molecular biology
  • Bioinformatics
  • Genomics

Background:

  • Protein kinases and phosphatases are crucial regulators of plant cellular processes.
  • Understanding their function requires integrating sequence and experimental data.
  • A centralized resource for this information is needed.

Purpose of the Study:

  • To introduce the PlantsP database, a curated resource for plant protein kinases and phosphatases.
  • To provide integrated sequence and functional genomics data, including T-DNA insertion mutants.
  • To offer comprehensive annotations for each protein.

Main Methods:

  • Database curation combining sequence and functional genomics data.
  • Integration of T-DNA insertion mutant information for Arabidopsis thaliana.

Related Experiment Videos

  • Annotation of sequence motifs, families, alignments, phylogenetic trees, and literature data.

    • Main Results:

    • The PlantsP database provides a comprehensive view of plant protein kinases and phosphatases.
    • It includes detailed annotations and links to experimental data, such as knockouts.
    • The database facilitates research on plant signaling pathways.

    Conclusions:

    • PlantsP serves as a valuable resource for researchers studying plant protein kinases and phosphatases.
    • The integration of diverse data types enhances our understanding of these key proteins.
    • The database supports functional genomics studies in plants.