DNA polymerase zeta introduces multiple mutations when bypassing spontaneous DNA damage in Saccharomyces cerevisiae

B D Harfe1, S Jinks-Robertson

  • 1Department of Biology, Emory University, Atlanta, GA 30322, USA.

Molecular Cell
|February 13, 2001
PubMed

Insights

Yeast strains lacking DNA repair pathways accumulate complex mutations. These complex events, involving frameshifts and base substitutions, depend on the Pol zeta translesion polymerase, highlighting its role in DNA damage bypass and hypermutation.

Area of Science:

  • Molecular Biology
  • Genetics
  • Biochemistry

Background:

  • Spontaneous DNA damage is repaired by multiple pathways with overlapping specificities.
  • High-fidelity repair pathways like nucleotide excision repair and recombination are crucial for maintaining genomic stability.

Purpose of the Study:

  • To investigate spontaneous mutations in yeast strains deficient in high-fidelity DNA repair pathways.
  • To elucidate the mechanisms underlying complex mutation events and their relationship with DNA damage tolerance.

Main Methods:

  • Utilized a frameshift reversion assay in yeast.
  • Analyzed spontaneous mutations accumulating in nucleotide excision repair and recombination-deficient strains.
  • Performed genetic analyses to identify key molecular players.

Main Results:

  • Mutant strains exhibited complex reversion events, including frameshifts accompanied by base substitutions, unlike wild-type strains.
  • These complex mutational events were found to be dependent on the Pol zeta translesion polymerase.
  • Implicated the DNA damage bypass activity of low-fidelity translesion polymerases in hypermutation.

Conclusions:

  • Deficiencies in high-fidelity DNA repair pathways lead to complex spontaneous mutations in yeast.
  • Pol zeta translesion polymerase plays a critical role in generating these complex mutations.
  • Low-fidelity translesion polymerases contribute to hypermutation phenomena through DNA damage bypass mechanisms.

Related Concept Videos

Proofreading01:43

Proofreading

Synthesis of new DNA molecules starts when DNA polymerase links nucleotides together in a sequence that is complementary to the template DNA strand. DNA polymerase has a higher affinity for the correct base to ensure fidelity in DNA replication. The DNA polymerase furthermore proofreads during replication, using an exonuclease domain that cuts off incorrect nucleotides from the nascent DNA strand.Errors during Replication Are Corrected by the DNA Polymerase EnzymeGenomic DNA is synthesized in...
Translesion DNA Polymerases02:10

Translesion DNA Polymerases

Translesion (TLS) polymerases rescue stalled DNA polymerases at sites of damaged bases by replacing the replicative polymerase and installing a nucleotide across the damaged site. Doing so, TLS allows additional time for the cell to repair the damage before resuming regular DNA replication.
TLS polymerases are found in all three domains of life - archaea, bacteria, and eukaryotes. Of the different classes of TLS polymerases, members of the Y family are fitted with specialized structures that...
Genome Copying Errors02:46

Genome Copying Errors

DNA replication is a well-evolved process that copies millions of base pairs with high fidelity during each cell division. Occasionally a wrong base or a long stretch of wrong bases may get added to the daughter strands. If the errors are left unchecked, cells might accumulate several mutations that might endanger their  survival. Therefore, the copying errors are checked and repaired at three levels.
Proofreading01:31

Proofreading

Synthesis of new DNA molecules is carried out by the enzyme DNA polymerase, which adds nucleotides on the daughter strand complementary to the template DNA strand. DNA polymerase has a higher affinity to add the correct base and ensures fidelity during DNA replication. Furthermore,  it exhibits proofreading activity during replication, using an exonuclease domain that cuts off incorrect nucleotides from the nascent DNA strand.
Errors During Replication are Corrected by the DNA Polymerase Enzyme
Nucleotide Excision Repair01:38

Nucleotide Excision Repair

DNA Distortion and Damage
Cells are regularly exposed to mutagens—factors in the environment that can damage DNA and generate mutations. UV radiation is one of the most common mutagens and is estimated to introduce a significant number of changes in DNA. These include bends or kinks in the structure, which can block DNA replication or transcription. If these errors are not fixed, the damage can cause mutations, which in turn can result in cancer or disease depending on which sequences are...
Spontaneous and Induced Mutations01:30

Spontaneous and Induced Mutations

Spontaneous mutations arise infrequently during DNA replication due to errors in the process. A key factor behind these errors is tautomeric shifts in nitrogenous bases, where bases transition from keto to enol forms or amino to imino forms. This shift can alter base-pairing rules, leading to mutations. Additionally, reactive oxygen species (ROS) arising from aerobic metabolism can damage DNA, resulting in depurination (loss of a purine base) or depyrimidination (loss of a pyrimidine base).