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Updated: Jul 13, 2026

Method for Measurement of Viral Fusion Kinetics at the Single Particle Level
Published on: September 7, 2009
Paramyxovirus fusion (F) protein: a conformational change on cleavage activation
R E Dutch1, R N Hagglund, M A Nagel
1Department of Biochemistry, Molecular Biology and Cell Biology, Northwestern University, Evanston, Illinois 60208-3500, USA.
Abstract:
The fusion (F) protein of the paramyxovirus SV5 promotes both virus-cell and cell-cell fusion. Recently, the atomic structure at 1.4 A of an extremely thermostable six-helix bundle core complex consisting of two heptad repeat regions of the F protein has been described (K. A. Baker, R. E. Dutch, R. A. Lamb, and T. S Jardetsky, Mol. Cell 3, 309-319, 1999). To analyze the conformations of the F protein at various stages of the membrane fusion process and to understand further the role of formation of the six-helix bundle core complex in promotion of membrane fusion, antibodies to peptides corresponding to regions of the F protein were obtained. Major changes in F protein antibody recognition were found after cleavage of the precursor protein F(0) to the fusogenically active disulfide-linked heterodimer, F(1) + F(2), and antibodies directed against the heptad repeat regions recognized only the uncleaved form. A monoclonal antibody directed against the F protein showed increased recognition at the cell surface of the cleaved form of the F protein as compared to uncleaved F protein, again indicating changes in conformation between the uncleaved and cleaved forms of the F protein. Anti-peptide antibodies specific for the heptad repeat regions were unable to precipitate a synthetic protein that consisted of the heptad repeat regions separated only by a small spacer, suggesting that the antibodies are unable to recognize their target regions when the heptad repeats are present in the six-helix bundle core complex. Taken together, these data indicate that the six-helix bundle core complex is not present in the precursor molecule F(0) and that significant conformational changes occur subsequent to cleavage of the F protein.
Insights
Paramyxovirus SV5 fusion (F) protein undergoes significant conformational changes upon cleavage. The six-helix bundle core complex is not present in the precursor F(0) form, indicating structural rearrangements during membrane fusion.
Area of Science:
- Virology
- Structural Biology
- Molecular Biology
Background:
- The paramyxovirus SV5 fusion (F) protein mediates virus-cell and cell-cell fusion.
- The atomic structure of a six-helix bundle core complex from the F protein's heptad repeat regions has been determined.
- Understanding F protein conformational changes is crucial for elucidating membrane fusion mechanisms.
Purpose of the Study:
- To analyze F protein conformations during membrane fusion.
- To investigate the role of the six-helix bundle core complex formation in membrane fusion.
- To understand conformational changes occurring after F protein cleavage.
Main Methods:
- Generation of antibodies against peptides corresponding to F protein regions.
- Analysis of antibody recognition patterns before and after F protein cleavage.
- Use of a monoclonal antibody to assess F protein conformation at the cell surface.
- Precipitation assays with anti-peptide antibodies and synthetic heptad repeat peptides.
Main Results:
- Major changes in antibody recognition were observed after cleavage of precursor F(0) to the F(1) + F(2) heterodimer.
- Antibodies targeting heptad repeat regions recognized only the uncleaved F protein.
- A monoclonal antibody showed increased recognition of the cleaved F protein on the cell surface.
- Anti-peptide antibodies could not recognize heptad repeat regions within a synthetic six-helix bundle complex.
Conclusions:
- The six-helix bundle core complex is absent in the precursor F(0) molecule.
- Significant conformational alterations occur in the F protein subsequent to its cleavage.
- These conformational changes are critical for the F protein's fusogenic activity.
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