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High Precision FRET at Single-molecule Level for Biomolecule Structure Determination
Published on: May 13, 2017
Total internal reflection with fluorescence correlation spectroscopy: combined surface reaction and solution
1Department of Chemistry, University of North Carolina, Chapel Hill 27599-3290, USA.
Total internal reflection with fluorescence correlation spectroscopy (TIR-FCS) quantifies surface binding kinetics and molecular concentrations. This study details the TIR-FCS autocorrelation function, incorporating surface kinetics and diffusion for enhanced interfacial analysis.
Area of Science:
- Biophysics
- Surface Science
- Spectroscopy
Background:
- Total internal reflection with fluorescence correlation spectroscopy (TIR-FCS) measures surface interactions of fluorescent molecules.
- Previous work established TIR-FCS autocorrelation functions without evanescent wave diffusion contributions.
- Understanding these contributions is crucial for accurate interfacial measurements.
Purpose of the Study:
- To describe the TIR-FCS autocorrelation function when surface kinetics and evanescent wave diffusion are both significant.
- To provide a comprehensive theoretical framework for TIR-FCS analysis.
- To enable more precise quantification of molecular behavior at interfaces.
Main Methods:
- Development of theoretical expressions for the fluorescence fluctuation autocorrelation function.
- Inclusion of parameters such as association/dissociation rates, surface site density, solution concentration, diffusion coefficient, and evanescent field depth.
- Mathematical modeling of fluorescence fluctuations under combined kinetic and diffusion influences.
Main Results:
- The TIR-FCS autocorrelation function is shown to depend on kinetic rate constants, surface density, solution concentration, diffusion, and evanescent field depth.
- Both general and approximate mathematical expressions for the autocorrelation function are presented.
- This work elucidates the interplay between surface binding and diffusion in TIR-FCS.
Conclusions:
- The presented expressions enhance the analytical capabilities of TIR-FCS for studying interfacial phenomena.
- Accurate measurement of surface association/dissociation rates and molecular concentrations is achievable.
- This theoretical advancement supports precise characterization of molecular dynamics at solution-substrate interfaces.
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