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Updated: Sep 9, 2026

Analysis of Single-cell Gene Transcription by RNA Fluorescent In Situ Hybridization (FISH)
Published on: October 7, 2012
Rapid recombination among transfected plasmids, chimeric episome formation and trans gene expression in Plasmodium
M Kadekoppala1, P Cheresh, D Catron
1Department of Pathology, Northwestern University Medical School, 303 E. Chicago Ave., Chicago, IL 60611-3008, USA.
Abstract:
Although recombination is known to be important to generating diversity in the human malaria parasite P. falciparum, the low efficiencies of transfection and the fact that integration of transfected DNA into chromosomes is observed only after long periods (typically 12 weeks or more) have made it difficult to genetically manipulate the blood stages of this major human pathogen. Here we show that co-transfection of a P. falciparum line with two plasmids, one expressing a green fluorescent protein (gfp) reporter and the other expressing a drug resistance marker (Tgdhfr-ts M23), allowed selection of a population in which about approximately 30% of the parasites produce GFP. In these GFP-producing parasites, the transfected plasmids had recombined into chimeric episomes as large as 20 kb and could be maintained under drug pressure for at least 16 weeks. Our data suggest that chimera formation occurs early (detected by 7--14 days) and that it involves homologous recombination favored by presence of the same P. falciparum 5'hrp3 UTR promoting transcription from each plasmid. This indicates the presence of high levels of homologous recombination activity in blood stage parasites that can be used to drive rapid recombination of newly introduced DNA, study mechanisms of recombination, and introduce genes for trans expression in P. falciparum.
Insights
Genetic manipulation of the malaria parasite Plasmodium falciparum is now feasible. Co-transfection with specific plasmids enables rapid homologous recombination in blood stages, facilitating genetic studies.
Area of Science:
- Molecular Parasitology
- Genetics of infectious diseases
Background:
- Genetic manipulation of Plasmodium falciparum blood stages is challenging due to low transfection efficiency and slow DNA integration.
- Recombination is crucial for generating diversity in P. falciparum.
Purpose of the Study:
- To develop a method for efficient genetic manipulation of P. falciparum blood stages.
- To investigate the mechanisms and timing of DNA recombination in P. falciparum.
Main Methods:
- Co-transfection of P. falciparum with two plasmids: one for GFP reporter, another for drug resistance (Tgdhfr-ts M23).
- Selection of GFP-producing parasites to identify successful transfections and recombination events.
- Analysis of recombined episomes and their maintenance under drug pressure.
Main Results:
- Successful selection of a P. falciparum population where ~30% of parasites produced GFP.
- Formation of chimeric episomes (up to 20 kb) from transfected plasmids, maintained for at least 16 weeks.
- Early chimera formation (7-14 days) mediated by homologous recombination, enhanced by shared P. falciparum 5'hrp3 UTR.
Conclusions:
- High levels of homologous recombination activity exist in P. falciparum blood stages.
- This method enables rapid DNA recombination for genetic studies and gene expression in P. falciparum.
- Facilitates future research into malaria parasite genetics and the development of new interventions.
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