Related Experiment Video
Updated: May 9, 2026

08:48
High-throughput Physical Mapping of Chromosomes using Automated in situ Hybridization
Published on: June 28, 2012
A high-resolution map of human chromosome 12.
K T Montgomery1, E Lee, A Miller
1Department of Molecular Genetics, Albert Einstein College of Medicine, Bronx, New York 10461, USA.
Nature
|March 10, 2001
Summary
A new sequence-tagged site map of chromosome 12, integrated with whole-genome fingerprinting, offers complete bacterial clone coverage. This integrated mapping protocol can serve as a model for constructing physical maps of entire genomes.
Area of Science:
- Genomics
- Molecular Biology
- Bioinformatics
Background:
- Physical mapping of large genomes is crucial for genetic research and understanding genome organization.
- Previous mapping efforts for chromosome 12 were fragmented, hindering comprehensive analysis.
Purpose of the Study:
- To integrate sequence-tagged site (STS) mapping with whole-genome fingerprinting for chromosome 12.
- To create an accurate and nearly complete physical map of chromosome 12 using bacterial clones.
- To establish a model protocol for genome-wide physical mapping.
Main Methods:
- Development and application of sequence-tagged site (STS) content mapping.
- Integration of STS mapping data with whole-genome fingerprinting data.
- Utilizing bacterial artificial chromosome (BAC) clones for physical mapping.
Main Results:
- Successful integration of the chromosome 12 STS-content map with whole-genome fingerprinting data.
- Achieved accurate and nearly complete bacterial clone coverage for chromosome 12.
- Demonstrated the robustness of the integrated mapping protocol.
Conclusions:
- The integrated mapping protocol provides a highly accurate physical map of chromosome 12.
- This approach serves as a scalable model for constructing physical maps of entire genomes.
- Facilitates future genomic studies and comparative genomics.
Related Concept Videos
Karyotyping
Overview
Chromosome Structure
A functional eukaryotic chromosome must contain three elements: a centromere, telomeres, and numerous origins of replication.
The centromere is a DNA sequence that links sister chromatids. This is also where kinetochores, protein complexes to which spindle microtubules attach, are constructed after the chromosome is replicated. The kinetochores allow the spindle microtubules to move the chromosomes within the cell during cell division.
Telomeres consist of non-coding repetitive nucleotide...
The centromere is a DNA sequence that links sister chromatids. This is also where kinetochores, protein complexes to which spindle microtubules attach, are constructed after the chromosome is replicated. The kinetochores allow the spindle microtubules to move the chromosomes within the cell during cell division.
Telomeres consist of non-coding repetitive nucleotide...
Karyotyping
Overview
Lampbrush Chromosomes
In 1882, Flemming observed lampbrush chromosomes (LBC) in salamander eggs. Later in 1892, Rückert observed LBCs in shark egg cells and coined the term "lampbrush chromosomes" because they looked like brushes used to clean kerosene lamps.
LBCs are made up of two pairs of conjugating homologous chromatids. Each chromatid consists of alternatively positioned regions of condensed-inactive chromatin and loosely placed-active side loops, which can be contracted and extended. The loops resemble the...
LBCs are made up of two pairs of conjugating homologous chromatids. Each chromatid consists of alternatively positioned regions of condensed-inactive chromatin and loosely placed-active side loops, which can be contracted and extended. The loops resemble the...
Chromosome Structure
A functional eukaryotic chromosome must contain three elements: a centromere, telomeres, and numerous origins of replication.
The centromere is a DNA sequence that links sister chromatids. This is also where kinetochores, protein complexes to which spindle microtubules attach, are constructed after the chromosome is replicated. The kinetochores allow the spindle microtubules to move the chromosomes within the cell during cell division.
Telomeres consist of non-coding repetitive nucleotide...
The centromere is a DNA sequence that links sister chromatids. This is also where kinetochores, protein complexes to which spindle microtubules attach, are constructed after the chromosome is replicated. The kinetochores allow the spindle microtubules to move the chromosomes within the cell during cell division.
Telomeres consist of non-coding repetitive nucleotide...
Lampbrush Chromosomes
In 1882, Flemming observed lampbrush chromosomes (LBC) in salamander eggs. Later in 1892, Rückert observed LBCs in shark egg cells and coined the term "lampbrush chromosomes" because they looked like brushes used to clean kerosene lamps.
LBCs are made up of two pairs of conjugating homologous chromatids. Each chromatid consists of alternatively positioned regions of condensed-inactive chromatin and loosely placed-active side loops, which can be contracted and extended. The loops resemble the...
LBCs are made up of two pairs of conjugating homologous chromatids. Each chromatid consists of alternatively positioned regions of condensed-inactive chromatin and loosely placed-active side loops, which can be contracted and extended. The loops resemble the...

