Related Experiment Video
Updated: Oct 9, 2026

Polysome Fractionation and Analysis of Mammalian Translatomes on a Genome-wide Scale
Published on: May 17, 2014
N-myc enhances the expression of a large set of genes functioning in ribosome biogenesis and protein synthesis
K Boon1, H N Caron, R van Asperen
1Department of Human Genetics, Academic Medical Center, University of Amsterdam, PO Box 22700, 1100 DE Amsterdam, The Netherlands.
Abstract:
The myc oncogenes are frequently activated in human tumors, but there is no comprehensive insight into the target genes and downstream cellular pathways of these transcription factors. We applied serial analysis of gene expression (SAGE) to identify targets of N-myc in neuroblastomas. Analysis of 42,000 mRNA transcript tags in SAGE libraries of N-myc- transfected and control neuroblastoma cells revealed 114 up-regulated genes. The majority of these genes have a role in ribosome assembly and activity. Northern blot analysis confirmed up-regulation of all tested transcripts. Induction was complete within 4 h after N-myc expression. The large majority of the ribosomal proteins were induced, as well as genes controlling rRNA maturation. Cellular rRNA content was 45% induced. SAGE libraries and northern blot analysis confirmed up-regulation of many of these genes in N-myc-amplified neuroblastomas. As N-myc can functionally replace c-myc, we analyzed whether N-myc targets were induced by c-myc as well. Approximately 40% of these N-myc targets were up-regulated in a c-myc-transfected melanoma cell line. These data suggest that myc genes function as major regulators of the protein synthesis machinery.
Insights
Myc oncogenes regulate protein synthesis. N-myc transcription factor targets genes involved in ribosome assembly and activity, impacting neuroblastoma tumor growth.
Area of Science:
- Molecular Biology
- Oncology
- Gene Regulation
Background:
- Myc oncogenes are frequently activated in human tumors.
- Comprehensive understanding of myc target genes and downstream pathways is lacking.
Purpose of the Study:
- To identify N-myc target genes in neuroblastomas using SAGE.
- To investigate the role of N-myc in regulating cellular pathways.
Main Methods:
- Serial Analysis of Gene Expression (SAGE) was used to analyze mRNA transcripts in N-myc-transfected and control neuroblastoma cells.
- Northern blot analysis was performed to confirm gene up-regulation.
- N-myc targets were also analyzed in c-myc-transfected melanoma cells.
Main Results:
- 114 genes were up-regulated by N-myc, predominantly involved in ribosome assembly and activity.
- N-myc induction of these genes was rapid (within 4 hours).
- Up-regulation of ribosomal proteins, rRNA maturation genes, and cellular rRNA content was observed.
- Many identified N-myc targets were also up-regulated in N-myc-amplified neuroblastomas.
- Approximately 40% of N-myc targets were induced by c-myc.
Conclusions:
- Myc genes, including N-myc, are major regulators of the protein synthesis machinery.
- N-myc plays a significant role in ribosome biogenesis and activity in neuroblastoma.
- The findings provide insight into the downstream effects of myc oncogene activation in cancer.
Related Concept Videos
Regulation of Expression at Multiple Steps
Ribosome Profiling
Applications of ribosome profiling
Ribosome profiling has many applications, including in vivo monitoring of translation inside a particular organ or tissue type and quantifying new protein synthesis levels.
The technique helps...
Ribosomal RNA Synthesis
Ribosome biogenesis begins with the synthesis of 5S and 45S pre-rRNAs by distinct RNA polymerases. The primary transcripts are extensively processed and modified before they are bound and folded by ribosomal proteins and assembly factors,...
Ribosomal RNA Synthesis
Ribosome biogenesis begins with the synthesis of 5S and 45S pre-rRNAs by distinct RNA polymerases. The primary transcripts are extensively processed and modified before they are bound and folded by ribosomal proteins and assembly factors,...
Regulation of Expression Occurs at Multiple Steps
Transcription results in the generation of precursor (pre-mRNA) that consists of both exons and introns, which needs further processing before being translated to a...
Regulation of Expression Occurs at Multiple Steps
Transcription results in the generation of precursor (pre-mRNA) that consists of both exons and introns, which needs further processing before being translated to a...
