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Updated: May 11, 2026

Lighting Up the Pathways to Caspase Activation Using Bimolecular Fluorescence Complementation
Published on: March 5, 2018
Covalent inhibition revealed by the crystal structure of the caspase-8/p35 complex
1Department of Biochemistry, Weill Medical College of Cornell University, New York, New York, 10021 USA
Abstract:
Apoptosis is a highly regulated process that is crucial for normal development and homeostasis of multicellular organisms. The p35 protein from baculoviruses effectively prevents apoptosis by its broad-spectrum caspase inhibition. Here we report the crystal structure of p35 in complex with human caspase-8 at 3.0 A resolution, and biochemical and mutagenesis studies based on the structural information. The structure reveals that the caspase is inhibited in the active site through a covalent thioester linkage to p35, which we confirmed by gel electrophoresis, hydroxylamine treatment and mass spectrometry experiments. The p35 protein undergoes dramatic conformational changes on cleavage by the caspase. The repositioning of the amino terminus of p35 into the active site of the caspase eliminates solvent accessibility of the catalytic dyad. This may be crucial for preventing hydrolysis of the thioester intermediate, which is supported by the abrogation of inhibitory activity through mutations at the N terminus of p35. The p35 protein also makes conserved contacts with the caspase outside the active-site region, providing the molecular basis for the broad-spectrum inhibitory activity of this protein. We demonstrate a new molecular mechanism of caspase inhibition, as well as protease inhibition in general.
Insights
Baculovirus p35 protein prevents apoptosis by inhibiting caspases. Structural and biochemical studies reveal a novel mechanism where p35 forms a covalent bond, blocking caspase activity and providing broad-spectrum protease inhibition.
Area of Science:
- Molecular Biology
- Biochemistry
- Structural Biology
Background:
- Apoptosis is a regulated process vital for multicellular organism development and homeostasis.
- Baculovirus p35 protein is a known inhibitor of apoptosis through broad-spectrum caspase inhibition.
Purpose of the Study:
- To elucidate the molecular mechanism of p35-mediated caspase inhibition.
- To determine the crystal structure of p35 in complex with human caspase-8.
Main Methods:
- X-ray crystallography to obtain the 3.0 Å structure of p35-caspase-8 complex.
- Biochemical assays and mutagenesis studies to validate structural findings.
Main Results:
- The structure revealed a covalent thioester linkage between p35 and the caspase-8 active site.
- Cleavage induces conformational changes in p35, repositioning its N-terminus to block the active site.
- Mutations at the p35 N-terminus abrogated inhibitory activity, confirming its role.
Conclusions:
- p35 employs a novel mechanism of caspase inhibition involving covalent linkage and conformational changes.
- The N-terminus of p35 is critical for stabilizing the inhibition and preventing intermediate hydrolysis.
- Conserved contacts outside the active site contribute to p35's broad-spectrum inhibitory activity.
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