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Measuring Single-Cell Mitochondrial DNA Copy Number and Heteroplasmy Using Digital Droplet Polymerase Chain Reaction
Published on: July 12, 2022
Replication and preferential inheritance of hypersuppressive petite mitochondrial DNA
D M MacAlpine1, J Kolesar, K Okamoto
1Department of Molecular Biology, University of Texas Southwestern Medical Center, 5323 Harry Hines Boulevard, Dallas, TX 75390-9148, USA.
Abstract:
Wild-type yeast mitochondrial DNA (mtDNA) is inherited biparentally, whereas mtDNA of hypersuppressive petite mutants is inherited uniparentally in crosses to strains with wild-type mtDNA. Genomes of hypersuppressive petites contain a conserved ori sequence that includes a promoter, but it is unclear whether the ori confers a segregation or replication advantage. Fluorescent in situ hybridization analysis of wild-type and petite mtDNAs in crosses reveals no preferential segregation of hypersuppressive petite mtDNA to first zygotic buds. We identify single-stranded DNA circles and RNA-primed DNA replication intermediates in hypersuppressive petite mtDNA that are absent from non-hypersuppressive petites. Mutating the promoter blocks hypersuppressiveness in crosses to wild-type strains and eliminates the distinctive replication intermediates. We propose that promoter-dependent RNA-primed replication accounts for the uniparental inheritance of hypersuppressive petite mtDNA.
Insights
Hypersuppressive petite yeast mitochondrial DNA (mtDNA) is uniparentally inherited due to a promoter-dependent RNA-primed replication mechanism, not preferential segregation. This explains its unique inheritance pattern in crosses.
Area of Science:
- Molecular Biology
- Genetics
- Yeast Biology
Background:
- Wild-type yeast mitochondrial DNA (mtDNA) exhibits biparental inheritance.
- Hypersuppressive petite mutants display uniparental mtDNA inheritance in crosses with wild-type strains.
- The role of the conserved ori sequence in hypersuppressive petite mtDNA remains unclear.
Purpose of the Study:
- To investigate the mechanism underlying the uniparental inheritance of hypersuppressive petite mtDNA.
- To determine if the ori sequence confers a segregation or replication advantage.
- To elucidate the role of the promoter within the ori sequence.
Main Methods:
- Fluorescent in situ hybridization (FISH) to analyze mtDNA segregation in yeast crosses.
- Analysis of DNA replication intermediates in wild-type and petite mtDNA.
- Site-directed mutagenesis of the promoter within the ori sequence.
Main Results:
- No preferential segregation of hypersuppressive petite mtDNA to zygotic buds was observed.
- Single-stranded DNA circles and RNA-primed DNA replication intermediates were identified in hypersuppressive petite mtDNA.
- Mutating the promoter abolished hypersuppressiveness and eliminated distinctive replication intermediates.
Conclusions:
- Uniparental inheritance of hypersuppressive petite mtDNA is not due to preferential segregation.
- Promoter-dependent RNA-primed replication is the likely mechanism driving hypersuppressive petite mtDNA inheritance.
- This mechanism provides a replication advantage, leading to uniparental inheritance.
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