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Updated: Jul 25, 2026

Genome-wide Analysis using ChIP to Identify Isoform-specific Gene Targets
Published on: July 7, 2010
Protein interactions of the MLL PHD fingers modulate MLL target gene regulation in human cells
K Fair1, M Anderson, E Bulanova
1Cancer Center, Medical Center, Loyola University-Chicago, Maywood, Illinois 60153.
Abstract:
The PHD fingers of the human MLL and Drosophila trx proteins have strong amino acid sequence conservation but their function is unknown. We have determined that these fingers mediate homodimerization and binding of MLL to Cyp33, a nuclear cyclophilin. These two proteins interact in vitro and in vivo in mammalian cells and colocalize at specific nuclear subdomains. Overexpression of the Cyp33 protein in leukemia cells results in altered expression of HOX genes that are targets for regulation by MLL. These alterations are suppressed by cyclosporine and are not observed in cell lines that express a mutant MLL protein without PHD fingers. These results suggest that binding of Cyp33 to MLL modulates its effects on the expression of target genes.
Insights
The PHD fingers of MLL and trx proteins mediate homodimerization and bind to Cyp33. This interaction in leukemia cells alters HOX gene expression, suggesting Cyp33 binding modulates MLL
Area of Science:
- Molecular biology
- Genetics
- Biochemistry
Background:
- The function of conserved PHD fingers in human MLL and Drosophila trx proteins remains largely unknown.
- MLL is implicated in gene regulation, particularly in leukemia.
- Nuclear cyclophilins, such as Cyp33, are involved in various cellular processes.
Purpose of the Study:
- To elucidate the function of PHD fingers in MLL and trx proteins.
- To investigate the interaction between MLL and Cyp33.
- To determine the role of the MLL-Cyp33 interaction in gene regulation, specifically HOX gene expression in leukemia.
Main Methods:
- In vitro and in vivo interaction studies to confirm MLL-Cyp33 binding.
- Co-localization studies using microscopy in mammalian cells.
- Overexpression of Cyp33 in leukemia cells and analysis of HOX gene expression.
- Assessment of cyclosporine's effect on gene expression alterations.
- Analysis of gene expression in cells with a mutant MLL protein lacking PHD fingers.
Main Results:
- MLL and trx PHD fingers mediate homodimerization and MLL binding to nuclear cyclophilin Cyp33.
- MLL and Cyp33 interact both in vitro and in vivo, localizing to specific nuclear subdomains.
- Overexpression of Cyp33 in leukemia cells leads to altered expression of MLL-regulated HOX genes.
- These HOX gene alterations are suppressed by cyclosporine and absent in MLL mutants lacking PHD fingers.
Conclusions:
- The PHD fingers of MLL are crucial for its interaction with Cyp33.
- The MLL-Cyp33 interaction plays a significant role in modulating MLL's regulation of HOX genes.
- This interaction is a potential target for therapeutic intervention in MLL-associated leukemias.
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