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Updated: Oct 8, 2026

Studying RNA Interactors of Protein Kinase RNA-Activated during the Mammalian Cell Cycle
Published on: March 5, 2019
The catalytic activity of dsRNA-dependent protein kinase, PKR, is required for NF-kappaB activation
1Department of Molecular and Cellular Biology, Centro Nacional de Biotecnología, Consejo Superior de Investigaciones Científicas, (CSIC), Campus Universidad Autónoma, 28049 Madrid, Spain.
Abstract:
The double stranded RNA-dependent protein kinase (PKR), in addition to its role as a translational controlling factor, is a key transcriptional regulator exerting antiviral and antitumoral activities. We have previously shown that induction of NF-kappaB by PKR is involved in apoptosis commitment and this process is mediated through activation of the IKK complex. To gain insights into the mechanism of activation of NF-kappaB by PKR, we have analysed the domains of PKR involved in IKK activation and subsequent NF-kappaB induction. In PKR(0/0) cells infected with a collection of vaccinia virus (VV) recombinants expressing different mutant forms of PKR, we found that only PKR forms conserving the catalytic activity are able to activate NF-kappaB. An inactive PKR mutant (K296R), was unable to induce NF-kappaB activation despite full expression of the protein in a wide range of concentrations, as defined by Western blot, EMSA, IKK kinase activity and NF-kappaB transactivation assays. Moreover, the mutant PKR (K296R) acts as a dominant negative of PKR-induced eIF-2alpha phosphorylation and NF-kappaB activation. However, PKR mutants unable to activate NF-kappaB still retain their ability to associate with the IKK complex, as confirmed by immunoprecipitation analysis. We conclude that the catalytic activity of PKR and not only a protein-protein interaction with the IKK complex, is needed for activation of the transcription factor NF-kappaB.
Insights
The double stranded RNA-dependent protein kinase (PKR) requires its catalytic activity, not just protein interaction, to activate NF-kappaB. This finding is crucial for understanding PKR
Area of Science:
- Molecular Biology
- Immunology
- Virology
Background:
- Double-stranded RNA-dependent protein kinase (PKR) regulates translation and acts as a transcriptional regulator with antiviral and antitumoral functions.
- PKR-induced NF-kappaB activation is linked to apoptosis commitment, mediated via the IKK complex.
Purpose of the Study:
- To elucidate the specific domains and mechanisms of PKR involved in activating the IKK complex and subsequent NF-kappaB induction.
- To determine whether catalytic activity or protein-protein interactions are essential for PKR-mediated NF-kappaB activation.
Main Methods:
- Utilized vaccinia virus (VV) recombinants expressing mutant forms of PKR in PKR(0/0) cells.
- Employed Western blot, EMSA, IKK kinase activity assays, and NF-kappaB transactivation assays.
- Performed immunoprecipitation analysis to assess protein-protein interactions between PKR and the IKK complex.
Main Results:
- Only PKR forms retaining catalytic activity could activate NF-kappaB.
- An inactive PKR mutant (K296R) failed to induce NF-kappaB activation and acted as a dominant negative.
- PKR mutants incapable of NF-kappaB activation could still associate with the IKK complex.
Conclusions:
- The catalytic activity of PKR is essential for the activation of the transcription factor NF-kappaB.
- Protein-protein interaction with the IKK complex alone is insufficient for PKR-mediated NF-kappaB activation.
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