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Updated: Aug 14, 2026

Methods to Discover Alternative Promoter Usage and Transcriptional Regulation of Murine Bcrp1
Published on: May 27, 2016
Selection and characterization of a high-activity ribozyme directed against the antineoplastic drug
P Kowalski1, A Wichert, P S Holm
1Institute of Pathology, Humboldt University Berlin, Germany.
Abstract:
Breast cancer resistance protein (BCRP) is a recently identified new member of the superfamily of ATP-binding cassette transporters. BCRP is a "half transporter" that may homo- or heterodimerize to form an active transport complex. A considerable overexpression of BCRP was reported from various atypical multidrug-resistant tumor cell lines, in particular from those which were established by treatment with mitoxantrone. Thus, BCRP represents a very interesting candidate molecule for reversal of a drug-resistant phenotype. Six hammerhead ribozymes directed against the BCRP-encoding mRNA were designed and tested for their ability to cleave their target molecule. The anti-BCRP ribozymes were in vitro synthesized using bacteriophage T7 RNA polymerase and oligonucleotide primers whereby one primer contains a T7 RNA polymerase promoter sequence. BCRP-encoding substrate RNA molecules were created by a reverse transcription polymerase chain reaction using total RNA prepared from the atypical multidrug-resistant gastric carcinoma cell line EPG85-257RNOV exhibiting a high BCRP mRNA expression level. One anti-BCRP ribozyme was found to show a very high endoribonucleolytic cleavage activity at physiologic pH and temperature. This ribozyme was characterized in a cell-free system with regard to its specific kinetic parameters using large target molecules.
Insights
Researchers designed hammerhead ribozymes to target breast cancer resistance protein (BCRP) mRNA. One ribozyme effectively cleaved BCRP mRNA, offering potential for reversing multidrug resistance in cancer.
Area of Science:
- Molecular Biology
- Biochemistry
- Genetics
Background:
- Breast cancer resistance protein (BCRP) is an ATP-binding cassette transporter.
- Overexpression of BCRP is linked to multidrug resistance in various cancer cell lines.
- BCRP is a potential target for overcoming drug resistance phenotypes.
Purpose of the Study:
- To design and test hammerhead ribozymes for cleaving BCRP-encoding mRNA.
- To identify a ribozyme with high activity against BCRP mRNA.
- To explore the potential of ribozymes in reversing BCRP-mediated drug resistance.
Main Methods:
- Design and in vitro synthesis of six hammerhead ribozymes targeting BCRP mRNA.
- Generation of BCRP-encoding substrate RNA using RT-PCR from multidrug-resistant cells.
- Assessment of ribozyme cleavage activity at physiologic conditions.
Main Results:
- One anti-BCRP ribozyme demonstrated significant endoribonucleolytic cleavage activity.
- The active ribozyme was characterized for kinetic parameters in a cell-free system.
- High BCRP mRNA expression was observed in the EPG85-257RNOV cell line.
Conclusions:
- A specific hammerhead ribozyme effectively cleaves BCRP mRNA.
- This ribozyme holds promise as a therapeutic tool for overcoming BCRP-mediated multidrug resistance.
- Further characterization and in vivo studies are warranted.
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