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Updated: Aug 4, 2026

Comparing the Affinity of GTPase-binding Proteins using Competition Assays
Published on: October 8, 2015
Structure-based mutagenesis reveals distinct functions for Ras switch 1 and switch 2 in Sos-catalyzed guanine
B E Hall1, S S Yang, P A Boriack-Sjodin
1Department of Molecular Genetics and Microbiology and the Graduate Programs in Molecular Pharmacology and Molecular and Cellular Biology, State University of New York at Stony Brook, New York 11794-5222, USA.
Abstract:
Ras GTPases function as binary switches in signaling pathways controlling cell growth and differentiation. The guanine nucleotide exchange factor Sos mediates the activation of Ras in response to extracellular signals. We have previously solved the crystal structure of nucleotide-free Ras in complex with the catalytic domain of Sos (Boriack-Sjodin, P. A., Margarit, S. M., Bar-Sagi, D., and Kuriyan, J. (1998) Nature 394, 337-343). The structure demonstrates that Sos induces conformational changes in two loop regions of Ras known as switch 1 and switch 2. In this study, we have employed site-directed mutagenesis to investigate the functional significance of the conformational changes for the catalytic function of Sos. Switch 2 of Ras is held in a very tight embrace by Sos, with almost every external side chain coordinated by Sos. Mutagenesis of contact residues at the switch 2-Sos interface shows that only a small set of side chains affect binding, with the most important contact being mediated by tyrosine 64, which is buried in a hydrophobic pocket of Sos in the Ras.Sos complex. Substitutions of Ras and Sos side chains that are inserted into the Mg(2+)- and nucleotide phosphate-binding site of switch 2 (Ras Ala(59) and Sos Leu(938) and Glu(942)) have no effect on the catalytic function of Sos. These results indicate that the interaction of Sos with switch 2 is necessary for tight binding, but is not the critical driving force for GDP displacement. The structural distortion of switch 1 induced by Sos is mediated by a small number of specific contacts between highly conserved residues on both Ras and Sos. Mutations of a subset of these residues (Ras Tyr(32) and Tyr(40)) result in an increase in the intrinsic rate of nucleotide dissociation from Ras and impair the binding of Ras to Sos. Based on this analysis, we propose that the interactions of Sos with the switch 1 and switch 2 regions of Ras have distinct functional consequences: the interaction with switch 2 mediates the anchoring of Ras to Sos, whereas the interaction with switch 1 leads to disruption of the nucleotide-binding site and GDP dissociation.
Insights
Site-directed mutagenesis reveals how the guanine nucleotide exchange factor Sos activates Ras GTPases. Sos binding to Ras switch 2 anchors it, while interactions with switch 1 disrupt nucleotide binding, promoting GDP dissociation.
Area of Science:
- Molecular Biology
- Cell Signaling
- Protein Structure-Function Relationships
Background:
- Ras GTPases are critical binary switches regulating cell growth and differentiation.
- The guanine nucleotide exchange factor Sos activates Ras in response to external signals.
- Previous structural studies revealed Sos induces conformational changes in Ras switch 1 and switch 2 regions.
Purpose of the Study:
- To investigate the functional significance of Sos-induced conformational changes in Ras.
- To elucidate the specific roles of Ras switch 1 and switch 2 interactions with Sos in Ras activation.
Main Methods:
- Site-directed mutagenesis of key residues in Ras and Sos.
- Analysis of Ras-Sos binding affinity and catalytic function.
- Structure-function analysis based on previous crystallographic data.
Main Results:
- Mutagenesis of Ras switch 2-Sos interface residues showed limited impact on binding, with Tyr64 being crucial.
- Mutations in Ras switch 2 residues interacting with the nucleotide-binding site did not affect Sos catalytic function.
- Mutations in Ras switch 1 residues disrupted Sos binding and increased nucleotide dissociation rates.
Conclusions:
- Sos interaction with Ras switch 2 primarily mediates stable anchoring to the guanine nucleotide exchange factor.
- Sos interaction with Ras switch 1 is critical for disrupting the nucleotide-binding site and facilitating GDP release.
- Distinct functional roles of switch 1 and switch 2 interactions explain Sos-mediated Ras activation.
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