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Updated: Aug 3, 2026

Rare Event Detection Using Error-corrected DNA and RNA Sequencing
Published on: August 3, 2018
Unexpected signals in a system subject to kinetic proofreading
Z J Liu1, H Haleem-Smith, H Chen
1Section on Chemical Immunology, Arthritis and Rheumatism Branch, National Institute of Arthritis and Musculoskeletal and Skin Diseases, National Institutes of Health, Bethesda, MD 20892, USA.
Ligand dissociation rates typically control cellular responses via kinetic proofreading. However, this study found that both fast and slow dissociating ligands equally stimulated gene transcription, challenging this rule.
Area of Science:
- Immunology
- Cellular Biology
- Molecular Biology
Background:
- Mast cells bind Immunoglobulin E (IgE) via high-affinity receptors.
- Ligand binding to IgE on mast cells triggers receptor aggregation, tyrosine phosphorylation, and cellular responses.
- Previous research indicated cellular response efficiency is inversely related to ligand dissociation rate, suggesting kinetic proofreading.
Purpose of the Study:
- To investigate potential exceptions to the kinetic proofreading model in mast cell signaling.
- To examine the relationship between ligand dissociation rates and downstream cellular events, specifically gene transcription.
Main Methods:
- Utilized multivalent ligands with varying dissociation rates.
- Measured tyrosine phosphorylation levels of IgE receptors.
- Assessed the transcription of the monocyte chemoattractant protein 1 (MCP-1) gene.
Main Results:
- Confirmed that ligand dissociation rate influences the efficiency of early signaling events.
- Observed that equivalent levels of receptor tyrosine phosphorylation, induced by both rapid and slow dissociating ligands, comparably stimulated MCP-1 gene transcription.
- Identified a potential anomaly where a distal event (gene transcription) was not solely dependent on the dissociation rate.
Conclusions:
- The kinetic proofreading model may not universally apply to all downstream cellular responses.
- Mast cell activation by IgE ligands can lead to gene transcription independently of the ligand's dissociation rate under certain conditions.
- Further investigation is needed to elucidate the mechanisms behind this observed anomaly in cellular signaling.
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